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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 21:30:56, GGGenome : Silkworm genome, Bmor1 (Apr, 2008)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

nscaf2686 dna:scaffold scaffold:Bmor1:nscaf2686:1:1149164:1
position: 795399-795413
CGGGTAGTGTTATTGTTAGAACATAGGACA795399TTCATTGACAACATTATCAAGATAAGTCTGCCTATACAGGGTGTC
nscaf3048 dna:scaffold scaffold:Bmor1:nscaf3048:1:1752822:1
position: 205021-205035
CGTGATCAAGAAGGACAGGATGTACTGCTC205021TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGATCAGAAGTG
nscaf2970 dna:scaffold scaffold:Bmor1:nscaf2970:1:2780867:1
position: 1552336-1552350
ACAAATCTCAGTAAATTTACTTTAGAATTT1552336TTCATTGACAACATTACGGAGTGAACTAACACAATGATACATAGA
nscaf3034 dna:scaffold scaffold:Bmor1:nscaf3034:1:5106423:1
position: 952690-952704
ACGAATGTTTCCGCTATTTCTGTTAAATTT952690TTCATTGACAACATTGTAGCATACAAGTTTAAAGACTTGCACAGA
nscaf2888 dna:scaffold scaffold:Bmor1:nscaf2888:1:9930683:1
position: 512374-512388
TTCCAGCTCGAAGGTAATATTTTAGTAAAT512374TTCATTGACAACATTTGGTATTCAAGATATACACTATAGTGTGCA
scaffold5214 dna:scaffold scaffold:Bmor1:scaffold5214:1:966:1
position: 420-434
TGGTATAATCCGAGGTTATAGTTAAAAAAA420AATGTTGTCAATGAACCAAAAAATTCAATACTTATTTTACAGTCA
nscaf3048 dna:scaffold scaffold:Bmor1:nscaf3048:1:1752822:1
position: 171480-171494
CACTTCTGATCCAGCCTGAGTGAAACGGAA171480AATGTTGTCAATGAAGAGCAGTACATCCTGTCCTTCTTGATCACG
nscaf2852 dna:scaffold scaffold:Bmor1:nscaf2852:1:2961484:1
position: 984344-984358
CTTTTTTGTTTTAAACTACAAAGAAGCCTT984344AATGTTGTCAATGAAATTTTTTAAAACAGGTTAGGGTTGTCTAAT
nscaf1681 dna:scaffold scaffold:Bmor1:nscaf1681:1:5888100:1
position: 2906704-2906718
CAATAAAATATCTCGTATTATGATGACAGT2906704AATGTTGTCAATGAAATGGTAGTTTTAAACATAAATGTCGTTTGT
nscaf1681 dna:scaffold scaffold:Bmor1:nscaf1681:1:5888100:1
position: 3848504-3848518
AGTTGAATCAATCTGTATAGTTTATAAGTG3848504AATGTTGTCAATGAAATAGTATTATAATAGGCTACTTCAGATTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/bmor1/TTCATTGACAACATT
lang : ja | db : bmor1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.76:28221/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.007 | search_minus_done; http://172.18.8.76:28221/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.091 | 0.003 | cgi_end;

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