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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 08:42:03, GGGenome : Cow genome, Bos_taurus_UMD_3.1.1/bosTau8 (Jun, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr4:7429780-7429794
TAAATGATCTGCCTTTTTTAAAGTAATCAT7429780TTCATTGACAACATTTCGAACACTTTGTAGCAAAAGAAAATAAAG
chr4:74933337-74933351
ACTCCCCTAAATATAAGTCCCATTTCTCCT74933337TTCATTGACAACATTTCAAACAGTATATGTCTTCTGTTTAAATTT
chr9:14072602-14072616
CCAGAGCTTCTGCTTCTATCCTGAATTAGG14072602TTCATTGACAACATTCCCTTCACCACCCTACTCTTTCTTATACTT
chr13:82401608-82401622
AGAAGTGTAATTACTGGGTCAGAATATGGA82401608TTCATTGACAACATTTGGGCTTGTTAAAAATTCAGGTTATTGAGT
chr19:22995209-22995223
CAGTGACTCCCCCTGACTCACTGCTTTAAA22995209TTCATTGACAACATTTTTTAAAAGGTAGAGAATTCTCATGAAAAG
chr24:24079264-24079278
TAGAAGTTCTTAATGTTTGTTTTCTTGGCT24079264TTCATTGACAACATTCCTTTTTGTGTGACCTCATCCACTACCAGC
chr2:58983946-58983960
GAATTTTTCACCCACAGAGTCAAAGGCTTT58983946AATGTTGTCAATGAAATGGAAGTAGATGTTTTTCTGGAATTCCCT
chr6:662482-662496
TTTGTTGTGATCCACATAGTCAAAGGCTTT662482AATGTTGTCAATGAAGCAGGAGTAGATTTTTTGGAGAAAAATGAT
chr6:45464808-45464822
CTCTGACCCACCGTGGCATTCTCACTTCCC45464808AATGTTGTCAATGAACTTCAAACTAAGCTCTGAAGGTCAACTGGC
chr6:63563295-63563309
TTTGTTGTGATCCATATAGTCAAAGGTTTT63563295AATGTTGTCAATGAAACAGAAGTAGATGTTTTTCTGGAATTCCCT
chr7:66107414-66107428
GATGTGTGGAGGGAATGAAAGAGATTTTTC66107414AATGTTGTCAATGAATGTGTAGAGCCCCTGGTTAAAAACATATAT
chr7:104620220-104620234
GAACAGTGGAAACGAGCTATGGATTATTTA104620220AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
chr9:83038437-83038451
CAACCACAAGAGATAGGCAGAATTTTCATC83038437AATGTTGTCAATGAATAAACTGAAGCAGAGAGAAGTTAAGCAAGA
chr14:44990466-44990480
TGTTTATATGTAACAAATTGGAAAACTTCA44990466AATGTTGTCAATGAAATCTCTTAGAAACCAATGCAAATATACTTG
chr21:5340491-5340505
AAATGTCTAGTTAAATGATGCTTTCGTTTT5340491AATGTTGTCAATGAAACATCTTAAATCTCATTGCTCTGCTCACAG
chr23:11405256-11405270
CAGTGCCTGGCGCACAGTAGGTGTGCAGTA11405256AATGTTGTCAATGAATTGATGGAAGGATGGATGGATGAATTCCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/bosTau8/TTCATTGACAACATT
lang : en | db : bosTau8 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.78:28029/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.004 | search_minus_done; http://172.18.8.78:28029/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.089 | 0.002 | cgi_end;

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