GGGenome | Results

2025-04-09 02:35:44, GGGenome : Marmoset pre-spliced RNA, TRaC 20.03 protein coding on calJacRKC1912, D3G 20.03 (Mar, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

ENSCJAG00000002275;TRaC2003L0325a|DNAAF4-CCPG1|chr10:34702178:34761900:-|prespliced
position: 37041-37055

TATGTTAAACTTGTCCAAGATATTTTTAGT37041TTCATTGACAACATTTTTCATTTTAAAAGTTCTGGGTTTTTTTTC

ENSCJAG00000002275;TRaC2003L0325b|DNAAF4-CCPG1|chr10:34702370:34761900:-|prespliced
position: 37041-37055

TATGTTAAACTTGTCCAAGATATTTTTAGT37041TTCATTGACAACATTTTTCATTTTAAAAGTTCTGGGTTTTTTTTC

ENSCJAG00000002275;TRaC2003L0325c|DNAAF4-CCPG1|chr10:34702699:34761900:-|prespliced
position: 37041-37055

TATGTTAAACTTGTCCAAGATATTTTTAGT37041TTCATTGACAACATTTTTCATTTTAAAAGTTCTGGGTTTTTTTTC

ENSCJAG00000002275;TRaC2003L0325d|DNAAF4-CCPG1|chr10:34702724:34761900:-|prespliced
position: 37041-37055

TATGTTAAACTTGTCCAAGATATTTTTAGT37041TTCATTGACAACATTTTTCATTTTAAAAGTTCTGGGTTTTTTTTC

ENSCJAG00000002275;TRaC2003L0325e|DNAAF4-CCPG1|chr10:34702775:34761900:-|prespliced
position: 37041-37055

TATGTTAAACTTGTCCAAGATATTTTTAGT37041TTCATTGACAACATTTTTCATTTTAAAAGTTCTGGGTTTTTTTTC

ENSCJAG00000002275;TRaC2003L0325f|DNAAF4-CCPG1|chr10:34709547:34761900:-|prespliced
position: 37041-37055

TATGTTAAACTTGTCCAAGATATTTTTAGT37041TTCATTGACAACATTTTTCATTTTAAAAGTTCTGGGTTTTTTTTC

ENSCJAG00000002275;TRaC2003L03260|DNAAF4-CCPG1|chr10:34719158:34761900:-|prespliced
position: 37041-37055

TATGTTAAACTTGTCCAAGATATTTTTAGT37041TTCATTGACAACATTTTTCATTTTAAAAGTTCTGGGTTTTTTTTC

ENSCJAG00000015526;TRaC2003L0e86c|RPS6KC1|chr19:37424547:37760690:+|prespliced
position: 224945-224959

GCATACGGAGAAACTGGATAGCAAAATAAA224945TTCATTGACAACATTTCCAACAAAACTAGGTGACAAACCATGAAT

ENSCJAG00000018706;TRaC2003L101aa|SDK1|chr2:183998511:184698229:+|prespliced
position: 254735-254749

GTGGTGCCTGGCCTGAGTCAGCACATTAGC254735TTCATTGACAACATTGGTTCATTCAACAAATAATTGCCTGAGAAG

ENSCJAG00000018706;TRaC2003L101ab|SDK1|chr2:183998511:184716587:+|prespliced
position: 254735-254749

GTGGTGCCTGGCCTGAGTCAGCACATTAGC254735TTCATTGACAACATTGGTTCATTCAACAAATAATTGCCTGAGAAG

ENSCJAG00000018706;TRaC2003L101ac|SDK1|chr2:183998511:184957975:+|prespliced
position: 254735-254749

GTGGTGCCTGGCCTGAGTCAGCACATTAGC254735TTCATTGACAACATTGGTTCATTCAACAAATAATTGCCTGAGAAG

ENSCJAG00000003740;TRaC2003L140d9|ZGRF1|chr3:79974568:80073025:+|prespliced
position: 73475-73489

ATATGAAAATTCAATAAAAGTACATTACAA73475AATGTTGTCAATGAAATTGTAATTATTTTTCAGACTATGACATTA

ENSCJAG00000000300;TRaC2003L177e4|CEP112|chr5:41761827:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177e5|CEP112|chr5:41761827:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177e6|CEP112|chr5:41761910:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177ed|CEP112|chr5:41869517:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177ee|CEP112|chr5:41869517:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177ef|CEP112|chr5:41869746:42347156:-|prespliced
position: 248436-248450

AAATGCTTCCAGCTTTTACCCATTCAGCAT248436AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177f1|CEP112|chr5:41869749:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177f2|CEP112|chr5:41869749:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177f3|CEP112|chr5:41870918:42170041:-|prespliced
position: 71321-71335

AAATGCTTCCAGCTTTTACCCATTCAGCAT71321AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177f4|CEP112|chr5:41870918:42242300:-|prespliced
position: 143580-143594

AAATGCTTCCAGCTTTTACCCATTCAGCAT143580AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000000300;TRaC2003L177f5|CEP112|chr5:41991829:42498494:-|prespliced
position: 399774-399788

AAATGCTTCCAGCTTTTACCCATTCAGCAT399774AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG

ENSCJAG00000014861;TRaC2003L1a834|RBMS1|chr6:92469844:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000037955;TRaC2003L1a835|RBMS1|chr6:92469844:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000037955;TRaC2003L1a836|MIR4785|chr6:92469844:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a837|RBMS1|chr6:92469941:92606985:-|prespliced
position: 40807-40821

AAGTTCCAAAGTAAATTTGCATTATATGCT40807AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a838|RBMS1|chr6:92469941:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a839|MIR4785|chr6:92469941:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a83a|RBMS1|chr6:92471537:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a83b|MIR4785|chr6:92471563:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a83c|RBMS1|chr6:92471569:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a83d|MIR4785|chr6:92472317:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a83e|RBMS1|chr6:92472317:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a83f|RBMS1|chr6:92472360:92614629:-|prespliced
position: 48451-48465

AAGTTCCAAAGTAAATTTGCATTATATGCT48451AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a840|MIR4785|chr6:92472360:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a841|RBMS1|chr6:92472373:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a842|RBMS1|chr6:92472382:92686269:-|prespliced
position: 120091-120105

AAGTTCCAAAGTAAATTTGCATTATATGCT120091AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a843|RBMS1|chr6:92472394:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a844|RBMS1|chr6:92478873:92685795:-|prespliced
position: 119617-119631

AAGTTCCAAAGTAAATTTGCATTATATGCT119617AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a845|MIR4785|chr6:92479688:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a846|RBMS1|chr6:92479700:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a847|RBMS1|chr6:92479729:92685795:-|prespliced
position: 119617-119631

AAGTTCCAAAGTAAATTTGCATTATATGCT119617AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a848|MIR4785|chr6:92482256:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a849|MIR4785|chr6:92485674:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a84a|RBMS1|chr6:92516400:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a84b|MIR4785|chr6:92541779:92607037:-|prespliced
position: 40859-40873

AAGTTCCAAAGTAAATTTGCATTATATGCT40859AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000014861;TRaC2003L1a84c|RBMS1|chr6:92557172:92686106:-|prespliced
position: 119928-119942

AAGTTCCAAAGTAAATTTGCATTATATGCT119928AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT

ENSCJAG00000019762;TRaC2003L1f442|MGAT4C|chr9:41009862:41920426:-|prespliced
position: 244003-244017

AACCCTCTCCTGTAGAATTTCTTTCCATGA244003AATGTTGTCAATGAAAAAGAATGAAAAGTCATGTAGATTCATGTA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.75:28813/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.098 | 0.017 | search_minus_done; http://172.18.8.75:28813/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=39
0.126 | 0.029 | cgi_end;