GGGenome | Results

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2025-04-17 12:51:21, GGGenome : Guinea pig genome, Broad/cavPor3 (Feb, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

scaffold_1:9772507-9772521

GGGTAAAATTGAGATTCAGTAAATATTTAT9772507AATGTTGTCAATGAAATAATTTCCTTAAATGCTTGCCTTTGATTG

scaffold_5:14517407-14517421

CTTAGGAAAATGTTCTCCTGCTCCTCGCTA14517407AATGTTGTCAATGAAGTATCCTGTCATTGTCAATGAAGACTTTTT

scaffold_6:57850114-57850128

GTAAGAATGAATCTGAGACAATTTTGACAT57850114AATGTTGTCAATGAATAATTCAGTCATGACCTGGGCCCTGATTTT

scaffold_58:6436167-6436181

ATATTACATCACTTCTTCTTTTACTATGTA6436167AATGTTGTCAATGAACTTCATAGCATATGAGCATATTATTGTATG

scaffold_73:4628727-4628741

TGGCACCTACGCTAGAATCAAAATGTACAG4628727AATGTTGTCAATGAAGAAAATTCACAGACTTGATAGAAGTCTGAC

scaffold_126:2870624-2870638

ATCATTATGTTGACCACCATAGATTTATAT2870624AATGTTGTCAATGAAAATTGCTTTCCTTATTGACCTGTGTTGATG

scaffold_2:4943338-4943352

AGTAAATTTTGCTAGCCACCTACATCAGTC4943338TTCATTGACAACATTGTACGAATTTGTGAGGACCTCTGGAAACAC

scaffold_9:16384707-16384721

TGTGAGAGACTTTAAAACATTGACTTGCAA16384707TTCATTGACAACATTTGTAAATCTTTGATTCAAATATTTTAACAT

scaffold_18:1453300-1453314

GTTTGATTCTAATTGATAAAAGTGTTACTC1453300TTCATTGACAACATTTTATGTTTTTTTTTAAATGGGTCAATACTC

scaffold_22:7279758-7279772

ACTTCCCTGCCTGTATGTGTTCCAGTGGTT7279758TTCATTGACAACATTGTAAAGGTTCTAATACTGTTTCAGCTCACT

scaffold_32:10374307-10374321

GGAGGCTCATCCCATCCCCAAAAAGAAAAA10374307TTCATTGACAACATTTTATTATCTTGAGTGTTGTGTACATTTGAT

scaffold_34:14204570-14204584

TTATTTTTTCATTCTAGATAACTTCTTTAG14204570TTCATTGACAACATTCCTTAAATTTGATAAGACATCCCCCTTTTC

scaffold_36:10453778-10453792

TATCAACTTGAGATTGCAGTTCACCAGCCT10453778TTCATTGACAACATTGTATTACTTTCTCCCCTGGCCCTCTTCTCT

scaffold_158:1547520-1547534

CTCTTTGAATCTCATCAGCCTCCACCATGA1547520TTCATTGACAACATTGTTTTTCCTTTTTTAGCTGAAGATAGAAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28036/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.005 | search_minus_done; http://172.18.8.78:28036/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=44
0.090 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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