GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 16:25:23, GGGenome : White rhinoceros genome, CerSimSim1.0/cerSim1 (May, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JH767725:31371459-31371473
TTTTCAGAAATCTGAATTGTCTAAATATTA31371459AATGTTGTCAATGAACTTTAAAAATTTGAAACTTTGTATAAGCCA
JH767735:33907402-33907416
CACGTCTTGCTCATCCATCCCAATCAACAC33907402AATGTTGTCAATGAAATGAACTAATGTGATATTCTATAGGATGTC
JH767741:1464857-1464871
ATGGAAGATTTTGATGAAAAGTCAGAAGAG1464857AATGTTGTCAATGAAGGTAGACTCTCCTCAGAGGTAAGGTTATTG
JH767741:6536605-6536619
CTGGTATATGTTTTCAAATGTGTATCATAA6536605AATGTTGTCAATGAAATATAAACAAACATGGAGAGAACAAGCAAG
JH767753:8670776-8670790
CTAATTTCATACGATGTCTCAAATGCCTCA8670776AATGTTGTCAATGAATCCATACTCTGATGGGGTAATTAATTACGC
JH767754:11259538-11259552
GGTGGTTTATATTTAGGAGCTATTACAAAT11259538AATGTTGTCAATGAACATTCTTTTCAAAGTATTTCTGTTAGACAT
JH767755:20570522-20570536
ATACTGTACCACCGTTTATGTGCTACACAG20570522AATGTTGTCAATGAAGTTAATTTTTATAAAATAAGATCTTTAAAA
JH767758:21617923-21617937
AATGGATAGCTAGAAACTTAATGGGCACCA21617923AATGTTGTCAATGAAAATGTTAAAAATGTATCTTTATAGAGACAT
JH767804:5528731-5528745
AAAAATACATGTGTTGTTTAGTAGAAAAGA5528731AATGTTGTCAATGAATAGCTTGTCATCATGGTTTTCTGTAAATAG
JH767834:4002675-4002689
CCGGAACTTTGTATGAACTCTTAATTTCTA4002675AATGTTGTCAATGAATTTATTATTATTAGTTTTTAAAATAATGTG
JH767842:314132-314146
CGAGTTTGTGTGCGTAACTAATTCTAAGTG314132AATGTTGTCAATGAAGTGATGTGGATAGAGGTGGTGTGGACCAAC
JH767726:15881902-15881916
CTACTAGTATTATTTATCAAACTCGGATCA15881902TTCATTGACAACATTAGTATCTTCTACTCTGTCATCCTTCTGGGT
JH767726:31034358-31034372
GATGAACATAAGTTTGATATTTTTAACCAT31034358TTCATTGACAACATTCTGTGCTCCACCCCTGGAAATTGCTTTTTA
JH767726:38564751-38564765
CATGATAACAATCTGAGTCATGTAGTTGAG38564751TTCATTGACAACATTCAAGTAATCCATAGCTCGTTTCCACTGTTC
JH767727:33302010-33302024
TAGAATATATTATCACTTTAAACACAGATT33302010TTCATTGACAACATTCTGTGGGCATCCATTTAATATTAATATTAA
JH767729:51921153-51921167
TCCATTCAAAACTTAGTCAAAAGTGTTTTT51921153TTCATTGACAACATTTGCCAGTGTTGTGGGGATGGGAGAAGAAAT
JH767734:7712088-7712102
CTGTGCTTTAAAAAATATGGAATTCCTTAA7712088TTCATTGACAACATTTCTTTAGCTTTAAAGTATGGTGGATCCCAG
JH767735:5799549-5799563
GTAAGGTATTGCTTTCCTTAATAGGACAAA5799549TTCATTGACAACATTATACCGAATAAACATAAAGAAAGTTGTTTA
JH767751:20728286-20728300
TTAAAACGAACATAACTGATTCAGGATTTA20728286TTCATTGACAACATTCCTGCAACATGCAACATAGTCAAAAATGTT
JH767777:12887177-12887191
ACTGAATGTGGAGAGTCCCTGTTTCTCCAT12887177TTCATTGACAACATTGGTGCTCTTAGACCTTTTACTTTTGTTAAT
JH767785:10589407-10589421
AGAATTGTGATTATCGTACAGTACATTCAA10589407TTCATTGACAACATTCATTGAAAATCTTCTATGTACCAGGTACTG
JH767787:12874649-12874663
TATCAGTTTGCATCATGATCTTGGTTACTG12874649TTCATTGACAACATTGGGCAGGCCCACGGACCTCATTCAGAGCAG
JH767833:2455826-2455840
AGAGCTCATACTGTAATGAATATCCATGTA2455826TTCATTGACAACATTCATTGTCTATCACACTTCAGCATTTATCAT
JH767836:2994170-2994184
TTTGCTAAGATGTGATAAATTTGTCTCCTC2994170TTCATTGACAACATTTTGCTTTCTCTGCAAAACCAAGTGGGTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/cerSim1/AATGTTGTCAATGAA
lang : en | db : cerSim1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.77:28068/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.008 | search_minus_done; http://172.18.8.77:28068/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=39
0.094 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).