GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-25 20:58:43, GGGenome : White rhinoceros genome, CerSimSim1.0/cerSim1 (May, 2012)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

JH767726:15881902-15881916
CTACTAGTATTATTTATCAAACTCGGATCA15881902TTCATTGACAACATTAGTATCTTCTACTCTGTCATCCTTCTGGGT
JH767726:31034358-31034372
GATGAACATAAGTTTGATATTTTTAACCAT31034358TTCATTGACAACATTCTGTGCTCCACCCCTGGAAATTGCTTTTTA
JH767726:38564751-38564765
CATGATAACAATCTGAGTCATGTAGTTGAG38564751TTCATTGACAACATTCAAGTAATCCATAGCTCGTTTCCACTGTTC
JH767727:33302010-33302024
TAGAATATATTATCACTTTAAACACAGATT33302010TTCATTGACAACATTCTGTGGGCATCCATTTAATATTAATATTAA
JH767729:51921153-51921167
TCCATTCAAAACTTAGTCAAAAGTGTTTTT51921153TTCATTGACAACATTTGCCAGTGTTGTGGGGATGGGAGAAGAAAT
JH767734:7712088-7712102
CTGTGCTTTAAAAAATATGGAATTCCTTAA7712088TTCATTGACAACATTTCTTTAGCTTTAAAGTATGGTGGATCCCAG
JH767735:5799549-5799563
GTAAGGTATTGCTTTCCTTAATAGGACAAA5799549TTCATTGACAACATTATACCGAATAAACATAAAGAAAGTTGTTTA
JH767751:20728286-20728300
TTAAAACGAACATAACTGATTCAGGATTTA20728286TTCATTGACAACATTCCTGCAACATGCAACATAGTCAAAAATGTT
JH767777:12887177-12887191
ACTGAATGTGGAGAGTCCCTGTTTCTCCAT12887177TTCATTGACAACATTGGTGCTCTTAGACCTTTTACTTTTGTTAAT
JH767785:10589407-10589421
AGAATTGTGATTATCGTACAGTACATTCAA10589407TTCATTGACAACATTCATTGAAAATCTTCTATGTACCAGGTACTG
JH767787:12874649-12874663
TATCAGTTTGCATCATGATCTTGGTTACTG12874649TTCATTGACAACATTGGGCAGGCCCACGGACCTCATTCAGAGCAG
JH767833:2455826-2455840
AGAGCTCATACTGTAATGAATATCCATGTA2455826TTCATTGACAACATTCATTGTCTATCACACTTCAGCATTTATCAT
JH767836:2994170-2994184
TTTGCTAAGATGTGATAAATTTGTCTCCTC2994170TTCATTGACAACATTTTGCTTTCTCTGCAAAACCAAGTGGGTCTT
JH767725:31371459-31371473
TTTTCAGAAATCTGAATTGTCTAAATATTA31371459AATGTTGTCAATGAACTTTAAAAATTTGAAACTTTGTATAAGCCA
JH767735:33907402-33907416
CACGTCTTGCTCATCCATCCCAATCAACAC33907402AATGTTGTCAATGAAATGAACTAATGTGATATTCTATAGGATGTC
JH767741:1464857-1464871
ATGGAAGATTTTGATGAAAAGTCAGAAGAG1464857AATGTTGTCAATGAAGGTAGACTCTCCTCAGAGGTAAGGTTATTG
JH767741:6536605-6536619
CTGGTATATGTTTTCAAATGTGTATCATAA6536605AATGTTGTCAATGAAATATAAACAAACATGGAGAGAACAAGCAAG
JH767753:8670776-8670790
CTAATTTCATACGATGTCTCAAATGCCTCA8670776AATGTTGTCAATGAATCCATACTCTGATGGGGTAATTAATTACGC
JH767754:11259538-11259552
GGTGGTTTATATTTAGGAGCTATTACAAAT11259538AATGTTGTCAATGAACATTCTTTTCAAAGTATTTCTGTTAGACAT
JH767755:20570522-20570536
ATACTGTACCACCGTTTATGTGCTACACAG20570522AATGTTGTCAATGAAGTTAATTTTTATAAAATAAGATCTTTAAAA
JH767758:21617923-21617937
AATGGATAGCTAGAAACTTAATGGGCACCA21617923AATGTTGTCAATGAAAATGTTAAAAATGTATCTTTATAGAGACAT
JH767804:5528731-5528745
AAAAATACATGTGTTGTTTAGTAGAAAAGA5528731AATGTTGTCAATGAATAGCTTGTCATCATGGTTTTCTGTAAATAG
JH767834:4002675-4002689
CCGGAACTTTGTATGAACTCTTAATTTCTA4002675AATGTTGTCAATGAATTTATTATTATTAGTTTTTAAAATAATGTG
JH767842:314132-314146
CGAGTTTGTGTGCGTAACTAATTCTAAGTG314132AATGTTGTCAATGAAGTGATGTGGATAGAGGTGGTGTGGACCAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/cerSim1/TTCATTGACAACATT
lang : ja | db : cerSim1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.77:28068/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.007 | search_minus_done; http://172.18.8.77:28068/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=37
0.091 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).