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2025-04-09 03:31:52, GGGenome : Chinese hamster genome, C_griseus_v1.0/criGri1 (Jul, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

KE380273:3073747-3073761

ACTCAATAAGAATGTATTGAATATCTATTA3073747TTCATTGACAACATTCTAGGAAGGAGATCTATAAGTCACTAGCAA

KE380942:363052-363066

GTTTAAAAACAACATCACCTATTTCTTGGT363052TTCATTGACAACATTGGTATTCCAAGGATTAATAATCTTTCTTGG

KE377625:1168-1182

CAAGCTCCTATTTTAGTGTTCTTGCTGAAC1168AATGTTGTCAATGAATGTTGGTTTTGATATGTACCATATGCTAGA

KE380761:261991-262005

TGACATGGCTTAGTTGGAAGGTAATTTCAA261991AATGTTGTCAATGAATATCTGTTAATATACTCAGTTATTGAAGTA

KE381516:1178093-1178107

CTTTGCAGAAAAGATTTCCTAACAAAATGT1178093AATGTTGTCAATGAAACTCATCAAATAGGCCAGCATTAGATCATT

KE381979:285312-285326

AGCTATGATAAGAATTTAAAGTATACTCAC285312AATGTTGTCAATGAAATATAAGAATAGAATGAAAAAGTAGGAAAC

KE382227:2654641-2654655

TGCCAATATCTTGACTTTATTGCAACACTT2654641AATGTTGTCAATGAAAGAGGCTGTGACTATTGCACTATTAGCTTC

KE383757:1079972-1079986

GAGTGGTGTATATAGCTCCCATCTGATCCC1079972AATGTTGTCAATGAAGGAACAGCAGAAAAAATAACCATCTATAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.079 | 0.070 | search_plus_done; http://172.18.8.78:28027/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.083 | 0.005 | search_minus_done; http://172.18.8.78:28027/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.085 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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