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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-22 08:23:20, GGGenome : Armadillo genome, Baylor/dasNov3 (Dec, 2011)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

JH563438:727618-727632
AAGTTGGAGAAAGCCATGTATATGGACAAG727618TTCATTGACAACATTATATGTTATAATGTAAAATGGAAATAGAAA
JH567186:4053425-4053439
TAGAAATTGAAAGATAAATATGTGAAGAAT4053425TTCATTGACAACATTCTGTACAAGGAACATCTGGCATCATAACCC
JH567659:428515-428529
AAGAGATGACAGGAATCTATAGCAAAGTAG428515TTCATTGACAACATTTAACTCTCCAACTAAGAATAAAGCAAATAT
JH569253:313560-313574
AATATCTACCATAACTGTAACTCTTCTCTA313560TTCATTGACAACATTGTTTTTATTTTATAATTTTGTCTTCCACTC
JH570461:2723979-2723993
TCTTCTTATGAAACCCCATGTGGACTTTCA2723979TTCATTGACAACATTTTACTGTAGTCATTAACATCATCTCCACTG
JH575305:61518-61532
GATGGGAAAAGAACAAGTAAAACTTCTCTA61518TTCATTGACAACATTATAATGTATATAGAAAATACTAAGAAATCT
JH578663:48958-48972
TCAGGTAGTAAAAATGATTTACGTTGTTTT48958TTCATTGACAACATTATTGACATTTCCTTATATTCATACATCATT
JH579167:447020-447034
TAGAATATATTATCGCTTCAAACACAGATT447020TTCATTGACAACATTTTGTGGGCATCCATTTAATGTTAATATTAA
JH562293:1908071-1908085
GTCAAATATGAACTTGAGGATGTGGAAAAT1908071AATGTTGTCAATGAAAGAAATGGCAAAATCAGACTGCAAGAGATC
JH563703:915013-915027
AGGGCAGGCTGCAAGCCAGAAACTCCAATG915013AATGTTGTCAATGAATTCGCCTGGAGACACTGGCTGTCTGGAGTA
JH566562:530638-530652
GTAAAGTGTGAAAAACTTCCTGGCCAAAAC530638AATGTTGTCAATGAAGCCACAACTAGCCAATTTGACTCTTATGAT
JH568096:824105-824119
AGATTTTAATAGAAAAACTGCAGATTTTTA824105AATGTTGTCAATGAAGTTATATTTTGAATCAACACTGGCTACCCA
JH568830:3292620-3292634
TATATAATTCTCAATTTCTTGATACATAAC3292620AATGTTGTCAATGAAATCACTGATGAAAAACACAGCATAGGGCAT
JH569070:74927-74941
TTTGAAGGAGAAGGGAAGAGGCTCGGAGAG74927AATGTTGTCAATGAAGAAACTTAAATACCTGATGGACAATGCATG
JH578793:399661-399675
AATGGCATCCTTTTTAGCAGGAAGGAAAAG399661AATGTTGTCAATGAATATGTCTGTGTTGATGATTGTGTCATTACT
JH583056:372621-372635
AAATAAGTTTTTAGTTCAATCATTCAGATC372621AATGTTGTCAATGAATGCTGATTTTCCCCCAGTAGATTTTGTTGT
JH583984:246360-246374
TTTAAAGATTGTACAAGCTCCTGTTTTTAA246360AATGTTGTCAATGAATAATAAAACAAAAAGAAACAAAAGCACTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/dasNov3/TTCATTGACAACATT
lang : ja | db : dasNov3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.78:28022/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.006 | search_minus_done; http://172.18.8.78:28022/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.090 | 0.002 | cgi_end;

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