GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:37:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Oryzias latipes cDNA clone:MF015DA006c18, 5' end.
BJ729720.1:416-435
AGGGATGAACATCCTAACCAGTAGCTCCTC416AAAACCCTCTAAATCAAAGTCCTGTAGTGGATAGTCACACCCATGCTGAC
Oryzias latipes cDNA, clone: oleb4l14, 5' end.
DK090816.1:479-498
AGGGATGAACATCCTAACCAGTAGCTCCTC479AAAACCCTCTAAATCAAAGTCCTGTAGTGGATAGTCACACCCATGCTGAC
Oryzias latipes cDNA, clone: oleb15d18, 5' end.
DK094543.1:479-498
AGGGATGAACATCCTAACCAGTAGCTCCTC479AAAACCCTCTAAATCAAAGTCCTGTAGTGGATAGTCACACCCATGCTGAC
Oryzias latipes cDNA, clone: olec44o14, 5' end.
DK150701.1:501-520
AGGGATGAACATCCTAACCAGTAGCTCCTC501AAAACCCTCTAAATCAAAGTCCTGTAGTGGATAGTCACACCCATGCTGAC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:60486005-60486024
CTAATTCCTACGGTGACCAAGAGGGAGATG60486005AAAACCCTCTAAATCAAAGTTTCTAAACAAAAGTTTAACAAAGGTTGTAC
Luzula sylvatica genome assembly, chromosome: 6.
OX326961.1:3344269-3344288
AAAAAACCCCTATACTTTTGGATATTCCAA3344269AAAACCCTCTAAATCAAAGTTTCATTTTCAAAAAATCCCCGATTGGGGTT
Geotrupes spiniger genome assembly, chromosome: 9.
OY390739.1:12280013-12280032
TGTTCTATACTGCTCGTTCAAAATGTAAAC12280013AAAACCCTCTAAATCAAAGTTTTCATCAATTAAAGCAAAAATGTCGTCAA
Geotrupes spiniger genome assembly, chromosome: 9.
OY390739.1:12491051-12491070
TGTTCTATACTGCCCGTTCAAAATGTCAAC12491051AAAACCCTCTAAATCAAAGTTTTCATCAATTAAAACAAAAAGGTCGTCAA
Oryzias latipes strain HSOK chromosome 21.
CP020641.1:17432856-17432875
GTCAGCATGGGTGTGACTATCCACTACAGG17432856ACTTTGATTTAGAGGGTTTTGAGGAGCTACTGGTTAGGATGTTCATCCCT
Oryzias latipes strain Hd-rR chromosome 21 sequence.
CP020685.1:16514121-16514140
GTCAGCATGGGTGTGACTATCCACTACAGG16514121ACTTTGATTTAGAGGGTTTTGAGGAGCTACTGGTTAGGATGTTCATCCCT
Oryzias latipes strain HNI chromosome 21.
CP020799.1:15187195-15187214
GTCAGCATGGGTGTGACTATCCACTACAGG15187195ACTTTGATTTAGAGGGTTTTGAGGAGCTACTGGTTAGGATGTTCATTCCT
Gobius niger genome assembly, chromosome: 14.
OX637608.1:15715430-15715449
AAACACAGGACTTGTATTTGTTTTCACAGC15715430ACTTTGATTTAGAGGGTTTTGTGTGTTTTTTTCATCAAAGACACTTGTAC
RTNIT1_19_F09.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_19_F09_A029 3', mRNA sequence.
DR059705.1:441-460
GAATTCAGTGGAAATTCCTGATTGTGCTTG441ACTTTGATTTAGAGGGTTTTCAGCGTTTGGAGAGACGTGAACATCTAGAT
CHEL3142.b1_K17.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHEL3142, mRNA sequence.
EE631880.1:105-124
TCTTACTCAAGATGCTGCTGCGTGATCTTC105ACTTTGATTTAGAGGGTTTTGACTTTGTTTCTTGGTCATGGCTAGGCGAC
Rattus norvegicus clone CH230-138L18, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC097201.8:67587-67606
TCCTTACATGTCAACTCTTCTTAAGAATGT67587ACTTTGATTTAGAGGGTTTTTTCACCTCAGATTCACTTGTTTTGTTTTGA
Rattus norvegicus clone CH230-360O18, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC117325.4:151620-151639
TCCTTACATGTCAACTCTTCTTAAGAATGT151620ACTTTGATTTAGAGGGTTTTTTCACCTCAGATTCACTTGTTTTGTTTTGA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:230268401-230268420
GTACAACTTTTGTTAAACTTTTGTTTAGAA230268401ACTTTGATTTAGAGGGTTTTCATCTCCCTCTTGGTCACCGTAGGAATTAG
Gossypium rotundifolium isolate GPK201 chromosome 12.
CP106733.1:85030601-85030620
ATCTGGTATGCTATGGGTTAAATGTTGAAA85030601ACTTTGATTTAGAGGGTTTTGAAAATCTCAGTTCGTTTAAGTAGGTATTC
Impatiens glandulifera genome assembly, chromosome: 3.
OU015483.1:19791402-19791421
TACGAGAAATATAAGAATGAAAAGCTTAGA19791402ACTTTGATTTAGAGGGTTTTATTTTAATATAGATGTGAGTGATTTAATAT
Impatiens glandulifera genome assembly, chromosome: 3.
OU015483.1:19821912-19821931
TACGAGAAATATAAGAATGAAAAGCTTAGA19821912ACTTTGATTTAGAGGGTTTTATTTTAATATAGATGTGAGTGATTTAATAT
Cornus suecica genome assembly, chromosome: 3.
OY998240.1:79088781-79088800
AAATCTTTGTTGGTGTGAGATGTATTTATG79088781ACTTTGATTTAGAGGGTTTTGCTAGAAAAATAGATTTTTGTTATAAGATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAACCCTCTAAATCAAAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAACCCTCTAAATCAAAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.253 | 0.244 | search_plus_done; http://172.18.8.135:50400/match?q=AAAACCCTCTAAATCAAAGT&k=0&no_gap=0&offset=0&limit=50
0.406 | 0.153 | search_minus_done; http://172.18.8.135:50400/match?q=ACTTTGATTTAGAGGGTTTT&k=0&no_gap=0&offset=0&limit=42
0.415 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).