GGGenome | Results

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2025-04-11 07:26:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:2821493-2821513

TCCTACACTAACATATTTTTTCAATCTTTA2821493AAAAGGAAGGTTCTCATTGTTGCATTGTTGCTACTACTGAATTGTTAAACC

Capsicum frutescens clone BAC PEPBAC043M10, complete sequence.
FJ597539.1:71364-71384

TCCTACACTAACATATTTTTTCAATCTTTA71364AAAAGGAAGGTTCTCATTGTTGCATTGTTGCATTGTTGCTACTACTGAATT

Capsicum frutescens clone BAC PEPBAC268G7, complete sequence.
FJ597541.1:32987-33007

TCCTACACTAACATATTTTTTCAATCTTTA32987AAAAGGAAGGTTCTCATTGTTGCATTGTTGCATTGTTGCTACTACTGAATT

Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:274567189-274567209

GGTTTAACAATTCAGTAGTAGCAACAATGC274567189AACAATGAGAACCTTCCTTTTTAAAGATTGAAAAAATATGTTAGTGTAGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=AAAAGGAAGGTTCTCATTGTT&k=0&no_gap=0&offset=0&limit=50
0.136 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=AACAATGAGAACCTTCCTTTT&k=0&no_gap=0&offset=0&limit=47
0.137 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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