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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 04:30:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Conger conger genome assembly, chromosome: 1.
OY741314.1:95167690-95167709
TTAACCTGCTCTACAGTGAGAATGGGGTCC95167690AAACCCGGGACAGATTTACCCTGCTCTACAGTGAGAATGGGGTCCAAACC
Conger conger genome assembly, chromosome: 1.
OY741314.1:95167870-95167889
TTACCCTGCTCTACAGTGAGAATGGGGTCC95167870AAACCCGGGACAGATTTACCCTGCTCTACAGTGAGAATGGGGTCCAAACC
UCRCS03_02K09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K09, mRNA sequence.
CF836241.1:363-382
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC363AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRCS03_04M12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04M12, mRNA sequence.
CF837511.1:363-382
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC363AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT01_0005L11_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0005L11, mRNA sequence.
CV704652.1:374-393
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC374AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT01_0006J19_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0006J19, mRNA sequence.
CV705257.1:376-395
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC376AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT01_0014A07_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0014A07, mRNA sequence.
CV710190.1:344-363
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC344AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UFPtC01_044 Cold-induced subtractive cDNA library Citrus trifoliata cDNA clone C44 similar to Elicitor inducible protein, mRNA sequence.
CX065961.1:406-425
CTTTTTGGGTTTGCTTAGAGAGCGAGAACC406AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
C05133B11SK FerrChloR1 Citrus sinensis x Citrus trifoliata cDNA clone C05133B11, mRNA sequence.
CX296058.1:357-376
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC357AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
C05807D04SK FerrChloR1 Citrus sinensis x Citrus trifoliata cDNA clone C05807D04, mRNA sequence.
CX296988.1:348-367
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC348AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
C05809D02SK FerrChloR1 Citrus sinensis x Citrus trifoliata cDNA clone C05809D02, mRNA sequence.
CX297163.1:329-348
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC329AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT01_5_003_H06_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_003_T7_H06, mRNA sequence.
CX542978.1:368-387
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC368AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT01_5_006_E04_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_006_T7_E04, mRNA sequence.
CX543368.1:379-398
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC379AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT01_5_008_B02_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_008_T7_B02, mRNA sequence.
CX543628.1:365-384
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC365AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT02_13D07_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-13D07-H14-1-6.b, mRNA sequence.
CX635702.1:380-399
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC380AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRPT02_58C02_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-58C02-E3-1-5.g, mRNA sequence.
CX642142.1:377-396
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC377AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
UCRCP01_012_D09_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_012_T3_D09, mRNA sequence.
CX664786.1:325-344
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC325AAACCCGGGACAGATTTACCGTCCCGGTTGGAAAAAAAAGAAAAAAAAAA
UCRCS11_05I16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005I16, mRNA sequence.
DN620589.1:358-377
CTTTTTTGGTTTGCTTAGAGAGCGAGAACC358AAACCCGGGACAGATTTACCGTCCCGGTTGGAGACGCTGCTCTCCCAAAC
Sequence 23 from Patent EP2609205.
JB832835.1:590-609
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC590GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Sequence 31 from Patent EP2609205.
JB832843.1:628-647
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC628GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Sequence 149 from Patent EP2609205.
JB832961.1:618-637
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC618GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Sequence 23 from Patent EP2835427.
LP003360.1:590-609
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC590GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Sequence 31 from Patent EP2835427.
LP003368.1:628-647
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC628GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Sequence 149 from Patent EP2835427.
LP003486.1:618-637
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC618GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRCS03_02K09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K09, mRNA sequence.
CF836242.1:614-633
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC614GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRCS03_04M12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04M12, mRNA sequence.
CF837512.1:300-319
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC300GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
CGF1004177_A10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_A10 5', mRNA sequence.
CK935175.1:628-647
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC628GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAGG
CGF1004741_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_C08 5', mRNA sequence.
CK940116.1:625-644
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC625GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRCS05_0002B02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B02, mRNA sequence.
CN185920.1:586-605
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC586GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCA
UCRPT01_0005L11_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0005L11, mRNA sequence.
CV704653.1:618-637
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC618GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAA
UCRPT01_0014A07_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0014A07, mRNA sequence.
CV710191.1:613-632
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC613GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UFPtC01_005 Cold-induced subtractive cDNA library Citrus trifoliata cDNA clone C5 similar to Wound-induced protein (WI12), mRNA sequence.
CX065932.1:406-425
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC406GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
C05065D06SK DroRLeaf1 Citrus clementina cDNA clone C05065D06, mRNA sequence.
CX294991.1:617-636
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC617GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRPT01_5_003_H06_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_003_T3_H06, mRNA sequence.
CX542977.1:613-632
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC613GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRPT01_5_006_E04_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_006_T3_E04, mRNA sequence.
CX543367.1:613-632
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC613GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRPT01_5_008_B02_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_008_T3_B02, mRNA sequence.
CX543627.1:608-627
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC608GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRPT02_13D07_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-13D07-H14-1-5.g, mRNA sequence.
CX635703.1:482-501
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC482GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
UCRCP01_012_D09_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_012_T7_D09, mRNA sequence.
CX664787.1:500-519
TTTTTTTTTTCTTTTTTTTCCAACCGGGAC500GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Citrus unshiu mRNA, clone: MWYEE17, 3'-end sequence, expressed in whole fruit.
DC894838.1:131-150
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC131GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Volcani_1_11_A01 Volcani01 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
DN795748.1:464-483
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC464GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
KN0AAI3BF09FM1 AbsDev1 Citrus clementina cDNA 5', mRNA sequence.
DY258776.1:614-633
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC614GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
KN0AAP5YM16FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY262317.1:116-135
GTTTGTGAGAGCAGCGTCTCCAACCGGGAC116GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
IC0AAA22AE08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267682.1:597-616
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC597GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
IC0AAA30AG01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY272079.1:257-276
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC257GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
IC0AAA41DF09RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276715.1:429-448
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC429GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
IC0AAA5CD04RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY283805.1:603-622
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC603GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
IC0AAA62BF09RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY284811.1:614-633
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC614GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
IC0AAA92AD03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY297195.1:613-632
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC613GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
IC0AAA9BF02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY300168.1:613-632
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC613GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
KN0AAQ11YE11RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY300785.1:590-609
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC590GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
CS00-C3-701-074-C12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY707942.1:613-632
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC613GGTAAATCTGTCCCGGGTTTGGGTCTCGCTCTCTAAGCAAAACAAAAAAG
CS00-C3-702-003-D08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY711067.1:142-161
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC142GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
CS00-C3-703-058-F01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY723416.1:175-194
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC175GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
CS00-C3-703-060-H07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY723590.1:175-194
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC175GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
CR05-C3-700-096-C05-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY787356.1:642-661
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC642GGTAAATCTGTCCCGGGTTTTGGTTCTCGCTCTCTGAGCAAACCAAAAAG
CR05-C3-701-104-B11-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY801579.1:626-645
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC626GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Citrus sinensis genome assembly, chromosome: 8.
OY754325.1:27099151-27099170
GTTTGGGAGAGCAGCGTCTCCAACCGGGAC27099151GGTAAATCTGTCCCGGGTTTGGTTCTCGCTCTCTAAGCAAACCAAAAAAG
Furfurilactobacillus rossiae strain RS chromosome, complete genome.
CP040576.1:890510-890529
ATGGCCAAAGTTAACCAGTGGGCCACGTGT890510GGTAAATCTGTCCCGGGTTTCCACGCCGTAACGTTGTTGGCAAGTGCCAA
Furfurilactobacillus rossiae strain L1 chromosome, complete genome.
CP040586.1:877583-877602
ATGGCCAAAGTTAACCAGTGGGCCACGTGT877583GGTAAATCTGTCCCGGGTTTCCACGCCGTAACGTTGTTGGCAAGTGCCAA
Furfurilactobacillus rossiae strain LR814 chromosome.
CP045181.1:2626096-2626115
ATGGCCAAAGTTAACCAGTGGGCCACGTGT2626096GGTAAATCTGTCCCGGGTTTCCACGCCGTAACGTTGTTGGCAAGTGCCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAACCCGGGACAGATTTACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACCCGGGACAGATTTACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.575 | 0.566 | search_plus_done; http://172.18.8.135:50400/match?q=AAACCCGGGACAGATTTACC&k=0&no_gap=0&offset=0&limit=50
1.987 | 1.412 | search_minus_done; http://172.18.8.135:50400/match?q=GGTAAATCTGTCCCGGGTTT&k=0&no_gap=0&offset=0&limit=32
2.014 | 0.027 | cgi_end;

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