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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:39:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MUC4LC1003_H06_.b_048. Musa acuminata leaves COLD stress Musa acuminata subsp. burmannicoides cDNA 5', mRNA sequence.
DN239317.1:445-464
ACAGAGACTACCTCGAGTACAACGATCCCA445AAACGTACCATCTTCCGTGCTTTGCCGACCATTAAGATTTTGTTCTTCTG
MA4LIMFES004A_MA4LIMFES004A_G10_.b_072 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES004A_MA4LIMFES004A_G10_.b_072 5', mRNA sequence.
JK533583.1:362-381
ACAGAGACTACCTCGAGTACAACGATCCCA362AAACGTACCATCTTCCGTGCTTTGCCGACCATTAAGATTTTGTTCTTCTG
MA4LIMFES014A_MA4LIMFES014A_G07_.b MA4LIMFES Musa acuminata cDNA clone MA4LIMFES014A_MA4LIMFES014A_G07_.b 5', mRNA sequence.
JK533599.1:362-381
ACAGAGACTACCTCGAGTACAACGATCCCA362AAACGTACCATCTTCCGTGCTTTGCCGACCATTAAGATTT
MAC4-66H07 MA4LIMFES Musa acuminata cDNA clone MAC4-66H07 5', mRNA sequence.
JK533618.1:247-266
ACAGAGACTACCTCGAGTACAACGATCCCA247AAACGTACCATCTTCCGTGC
TSA: Musa acuminata AAA Group Unigene12640_NK1 mRNA sequence.
JV435740.1:38-57
ACAGAGACTACCTCGAGTACAACGATCCCA38AAACGTACCATCTTCCGTGCTTTGCCGACCATTAAGATTTTGTTCTTCTG
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:37018641-37018660
ACAGAGACTACCTCGAGTACAACGATCCCA37018641AAACGTACCATCTTCCGTGCTTTGCCGACCATTAAGATTTTGTTCTTCTG
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:35842202-35842221
ACAGAGACTACCTCGAGTACAACGATCCCA35842202AAACGTACCATCTTCCGTGCTTTGCCGACCATTAAGATTTTGTTCTTCTG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:36729856-36729875
ACAGAGACTACCTCGAGTACAACGATCCCA36729856AAACGTACCATCTTCCGTGCTTTGCTGACCATTAAGATTTTGCTCTTCTG
TSA: Musa acuminata AAA Group Unigene11987_B1 mRNA sequence.
JV357414.1:222-241
CAGAAGAACAAAATCTTAATGGTCGGCAAA222GCACGGAAGATGGTACGTTTTGGGATCGTTGTACTCGAGGTAGTCTCTGT
Musa schizocarpa genome assembly, chromosome: S06.
LS990921.1:40229548-40229567
CAGAAGAGCAAAATCTTAATGGTCAGCAAA40229548GCACGGAAGATGGTACGTTTTGGGATCGTTGTACTCGAGGTAGTCTCTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAACGTACCATCTTCCGTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACGTACCATCTTCCGTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.403 | 0.394 | search_plus_done; http://172.18.8.135:50400/match?q=AAACGTACCATCTTCCGTGC&k=0&no_gap=0&offset=0&limit=50
0.445 | 0.043 | search_minus_done; http://172.18.8.135:50400/match?q=GCACGGAAGATGGTACGTTT&k=0&no_gap=0&offset=0&limit=42
0.447 | 0.002 | cgi_end;

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