GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:15:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:38736827-38736846
CGTTATACATACAAGGAAAATTTGCCATAT38736827AAATCCGATTCCATAATTCCACCCAAAAGGATAGAACGTCATGTTCTTGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:35520713-35520732
CGTTATACATACAAGCAAAATTTGCCATAT35520713AAATCCGATTCCATAATTCCACCCAAAAGGATAGAACGTCATGTTCTTGA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:39038299-39038318
CGTTATACATACAAGGAAAATTTGCCATAT39038299AAATCCGATTCCATAATTCCACCCAAAAGGATAGAACATCATGTTCTTGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:38337165-38337184
CGTTATACATACAAGGAAAATTTGCCATAT38337165AAATCCGATTCCATAATTCCACCCAAAAGGATAGAACGTCATGTTCTTGA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:37941112-37941131
CGTTATACATACAAGGAAAATTTGCCATAT37941112AAATCCGATTCCATAATTCCACCCAAAAGGATAGAACGTCATGTTCTTGA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:38500252-38500271
CGTTATACATACAAGGAAAATTTGCCATAT38500252AAATCCGATTCCATAATTCCACCCAAAAGGATAGAACATCATGTTCTTGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39140652-39140671
CGTTATACATACAAGGAAAATTTGCCATAT39140652AAATCCGATTCCATAATTCCACCCAAAAGGATAGAACATCATGTTCTTGA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX638871.1:425607949-425607968
TTATTTTTCTCTTTCTTTGTTTCCTTCTTT425607949AAATCCGATTCCATAATTCCAAAAGATGTTCATGATTTATTTTAAAAAAA
Patella vulgata genome assembly, chromosome: 6.
OW026353.2:57424230-57424249
TTCATTTCATTTACCTAGCCCGCGTGTTGA57424230AAATCCGATTCCATAATTCCATCCCCGACATTTTGTCTTTAAGTTTGAAT
Patella vulgata genome assembly, chromosome: 6.
OW026353.2:57460305-57460324
TTCATTTCATTTACCTAGCCCGCGTGTTGA57460305AAATCCGATTCCATAATTCCATCCCCGACATTTTGTCTTTAAGTTTGAAT
Echeneis naucrates genome assembly, chromosome: 13.
LR584054.1:23020919-23020938
TCCTTCCTCTCTGTGCAAGAAAAAGGAAAT23020919GGAATTATGGAATCGGATTTCTGCACAAAATCTCTGCTGGGATTTCACCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:7557700-7557719
TCAAGAACATGACGTTCTATCCTTTTGGGT7557700GGAATTATGGAATCGGATTTATATGGCAAATTTTCCTTGTATGTATAACG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:7937119-7937138
TCAAGAACATGATGTTCTATCCTTTTGGGT7937119GGAATTATGGAATCGGATTTATATGGCAAATTTTCCTTGTATGTATAACG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:7297382-7297401
TCAAGAGCATGACGTTCTATCCTTTTGGGT7297382GGAATTATGGAATCGGATTTATATGGCAAATTTTCCTTGTATGTATAACG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:7792023-7792042
TCAAGAGCATGACGTTCTATCCTTTTGGGT7792023GGAATTATGGAATCGGATTTATATGGCAAATTTTCCTTGTATGTATAACG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:7621893-7621912
TCAAGAACATGACGTTCTATCCTTTTGGGT7621893GGAATTATGGAATCGGATTTATATGGCAAATTTTCCTTGTATGTATAACG
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:7972346-7972365
TCGAGAACATGACATTCTATCCTTTTAGGT7972346GGAATTATGGAATCGGATTTATACGGCAGTTTTTCCTTGTACGTATAACG
Sphenella marginata genome assembly, chromosome: 4.
OX608081.1:73631052-73631071
CATTGAACTCAAATTTAAAGCAAAAATTAT73631052GGAATTATGGAATCGGATTTGTTTTGTTAGTATCTTTTTTTAAATTTAAT
Microdon myrmicae genome assembly, chromosome: 5.
OZ007501.1:29837644-29837663
AATGATTTCAGGTAGCGAAATCCGTATCGG29837644GGAATTATGGAATCGGATTTTCAGACTAAAAGGAGGCGAACCGGTTCGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAATCCGATTCCATAATTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATCCGATTCCATAATTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=AAATCCGATTCCATAATTCC&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GGAATTATGGAATCGGATTT&k=0&no_gap=0&offset=0&limit=40
0.146 | 0.006 | cgi_end;

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