GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 07:00:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BN15.022C21F020212 BN15 Brassica napus cDNA clone BN15022C21, mRNA sequence.
CD814154.1:103-124
CTCATCGAACAATTTTGATTTCAAAATTCA103AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCGAAGAAGAGGA
BNSCS3CT_UP_025_H10_12JAN2005_066 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466896.1:61-82
CTCATCGAACAATTTTGATTTCAAAATTCA61AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCGAAGAAGAGGA
BNSCS1CT_UP_068_A04_26MAR2007_032 Brassica napus BNSCS1CT Brassica napus cDNA 5', mRNA sequence.
EV015016.1:108-129
CTCATCGAACAATTTTGATTTCAAAATTCA108AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCGAAGAAGAGGA
BR004003 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-027H06 5', mRNA sequence.
EX019359.1:63-84
CTCATCGAACAATTTTGATTTCAAAATTCA63AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCTAAGAAGAGGA
MMN2_1969 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA, mRNA sequence.
GR727352.1:174-195
CTCATCGAACAATTTTGATTTCAAATTTCA174AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCGAAGAAGAGGA
Brassica rapa subsp. pekinensis clone KBrB004O13, complete sequence.
CU695253.1:114577-114598
CTCATCGAACAATTTTGATTTCAAAATTCA114577AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCTAAGAAGAGGA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:20813193-20813214
CTCATCGAACAATTTTGATTTCAAAATTCA20813193AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCTAAGAAGAGGA
Brassica rapa genome, scaffold: A08.
LR031575.1:19794400-19794421
CTCATCGAACAATTTTGATTTCAAAATTCA19794400AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCTAAGAAGAGGA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:25533043-25533064
CTCATCGAACAATTTTGATTTCAAAATTCA25533043AAATCCTCCCACTGTTTCCGATCCATCATGCCGCCTGGTGCTAAGAAGAGGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_18988.
FX707762.1:947-968
TCCTCTTCTTAGCACCAGGCGGCATGATGG947ATCGGAAACAGTGGGAGGATTTTGAATTTTGAAATCAAAATTGTTCGATGAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_16075.
FX749127.1:941-962
TCCTCTTCTTAGCACCAGGCGGCATGATGG941ATCGGAAACAGTGGGAGGATTTTGAATTTTGAAATCAAAATTGTTCGATGAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012O06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189589.2:29867-29888
TCCTCTTCTTAGCACCAGGCGGCATGATGG29867ATCGGAAACAGTGGGAGGATTTTGAATTTTGAAATCAAAATTGTTCGATGAG
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:5657642-5657663
TCCTCTTCTTAGCACCAGGCGGCATGATGG5657642ATCGGAAACAGTGGGAGGATTTTGAATTTTGAAATCAAAATTGTTCGATGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAATCCTCCCACTGTTTCCGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATCCTCCCACTGTTTCCGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.350 | 0.342 | search_plus_done; http://172.18.8.135:50400/match?q=AAATCCTCCCACTGTTTCCGAT&k=0&no_gap=0&offset=0&limit=50
0.377 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=ATCGGAAACAGTGGGAGGATTT&k=0&no_gap=0&offset=0&limit=41
0.380 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).