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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:08:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST297169 tomato fruit mature green, TAMU Solanum lycopersicum cDNA clone cLEF2E13, mRNA sequence.
AW220700.1:33-52
AAAACCTTAAACCCTAATTCTCAATTCCAA33AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST298694 tomato fruit red ripe, TAMU Solanum lycopersicum cDNA clone cLEN6A5, mRNA sequence.
AW221883.1:109-128
AAAACCTTAAACCCTAATTCTCAATTCCAA109AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST301159 tomato fruit red ripe, TAMU Solanum lycopersicum cDNA clone cLEN16J6, mRNA sequence.
AW224348.1:109-128
AAAACCTTAAACCCTAATTCTCAATTCCAA109AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST339225 tomato flower buds, anthesis, Cornell University Solanum lycopersicum cDNA clone cTOD4E22 5', mRNA sequence.
AW737798.1:87-106
AAAACCTTAAACCCTAATTCTCAATTCCAA87AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST427256 potato leaves and petioles Solanum tuberosum cDNA clone cSTB25K12 5' sequence, mRNA sequence.
BE923487.1:28-47
ACCTTAAACCCTAATTCTCAATTCCAA28AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST472944 tomato shoot/meristem Solanum lycopersicum cDNA clone cTOF16E11 5' sequence, mRNA sequence.
BG127298.1:33-52
AAAACCTTAAACCCTAATTCTCAATTCCAA33AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST473088 tomato shoot/meristem Solanum lycopersicum cDNA clone cTOF16D11 5' sequence, mRNA sequence.
BG127442.1:33-52
AAAACCTTAAACCCTAATTCTCAATTCCAA33AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST531839 tomato callus, TAMU Solanum lycopersicum cDNA clone cLEC66K9 5' end, mRNA sequence.
BI421173.1:33-52
AAAACCTTAAACCCTAATTCTCAATTCCAA33AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST545676 tomato flower, buds 0-3 mm Solanum lycopersicum cDNA clone cTOA27B2 5' end, mRNA sequence.
BI925787.1:33-52
AAAACCTTAAACCCTAATTCTCAATTCCAA33AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
EST579074 potato roots Solanum tuberosum cDNA clone cPRO21D10 5' end, mRNA sequence.
BM404747.1:33-52
AAAACCTTAAACCCTAATTCTCAATTCCAA33AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum cDNA, clone: FC05BH04, 5' end, expressed in fruit.
BW686242.1:37-56
AAAACCTTAAACCCTAATTCTCAATTCCAA37AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum cDNA, clone: LEFL1077BF05, 5' end, expressed in leaf.
DB702671.1:88-107
AAAACCTTAAACCCTAATTCTCAATTCCAA88AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum cDNA, clone: LEFL2026E11, 5' end, expressed in fruit.
DB717522.1:93-112
AAAACCTTAAACCCTAATTCTCAATTCCAA93AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum cDNA, clone: LEFL2033M01, 5' end, expressed in fruit.
DB720060.1:87-106
AAAACCTTAAACCCTAATTCTCAATTCCAA87AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
SV68G11_SOL21A_084 SV6 Solanum chacoense cDNA, mRNA sequence.
DN983314.1:121-140
AAAACCTTAAACCCTAATTCTCAATTCCAA121AACCTCCCTAAAACCCCAACTTTTCTTCGTTCTCTTTCCTACCCTTTTCT
16957.2 Swollen Stolon Solanum tuberosum cDNA clone 16957 5', mRNA sequence.
DR034387.1:73-92
AAAACCTTAAACCCTAATTCTCAATTCCAA73AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
LET022F7_2005-09-30_1/LET022F7_F01_1 Solanum lycopersicum trichomes Solanum lycopersicum cDNA, mRNA sequence.
ES891039.1:147-166
AAAACCTTAAACCCTAATTCTCAATTCCAA147AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
TOBESTR038D11 TOBEST cDNA library 1 Nicotiana tabacum cDNA 5', mRNA sequence.
FG624542.1:148-167
AAAACCCTACACCCTAACTCTCAATTCCAA148AACCTCCCTAAAACCCCAACTTTTCTCCTCTCACTTTCCTCCTACCCTTT
Solanum melongena mRNA, clone: SmFL03O10, 5'end.
FS068867.1:63-82
AAAACCATAAACCCTAATTCTCAATTCCAA63AACCTCCCTAAAACCCCAACTTTTCTTTCCTACCCTTTTCTCACCACCTC
Nicotiana tabacum cDNA, clone: TBK02GR0004_4_B01, 5'-end sequence.
FS402226.1:103-122
AAAACCCTACACCCTAACTCTCAATTCCAA103AACCTCCCTAAAACCCCAACTTTTCTCCTCTCACTTTCCTCCTACCCTTT
P19H4 Geraniol treated Tomato seedling subtraction library Solanum lycopersicum cDNA, mRNA sequence.
GH205082.1:81-100
AAAACCTTAAACCCTAATTCTCAATTCCAA81AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
C20-2-G07 potato tubers cold stress substracted cDNA library Solanum berthaultii cDNA clone C20-2-G07 5', mRNA sequence.
HS989755.1:316-335
AAAACCTTAAACCCTAATTCTCAATTCCAA316AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum cDNA, clone: FC05BH04, HTC in fruit.
AK246260.1:16-35
AATTCTCAATTCCAA16AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum cDNA, clone: LEFL1077BF05, HTC in leaf.
AK319614.1:88-107
AAAACCTTAAACCCTAATTCTCAATTCCAA88AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum Micro-Tom DNA, chromosome 2, draft genome sequence.
AP028936.1:60421791-60421810
AAAACCTTAAACCCTAATTCTCAATTCCAA60421791AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum cultivar I-3 chromosome 2.
CP023758.1:44231105-44231124
AAAACCTTAAACCCTAATTCTCAATTCCAA44231105AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum tuberosum cultivar P8 chromosome 2.
CP046680.1:35521001-35521020
AAAACSTTAAACCCTAATTCTCAATTCCAA35521001AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum tuberosum cultivar MSH/14-112 chromosome 2.
CP046695.1:35519324-35519343
AAAACCTTAAACCCTAATTCTCAATTCCAA35519324AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum pinnatisectum cultivar CGN17745 chromosome 2.
CP047559.1:35512589-35512608
AAAACGTTAAACCCTAATTCTCAATTCCAA35512589AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTCCCTACCCTTTTCT
Solanum tuberosum cultivar Solyntus chromosome 2.
CP055235.1:30942005-30942024
AAAACCTTAAACCCTAATTCTCAATTCCAA30942005AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum verrucosum cultivar 11H23 chromosome 2.
CP133613.1:34358015-34358034
AAAACCTTAAACCCTAATTCTCAATTCCAA34358015AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum pennellii chromosome ch02, complete genome.
HG975441.1:47851856-47851875
AAAACCTTAAACCCTAATTCTCAATTCCAA47851856AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum chromosome ch02, complete genome.
HG975514.1:38807886-38807905
AAAACCTTAAACCCTAATTCTCAATTCCAA38807886AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum lycopersicum genome assembly, chromosome: 2.
OU640345.1:43421237-43421256
AAAACCTTAAACCCTAATTCTCAATTCCAA43421237AACCTCCCTAAAACCCCAACTTTTCTTCTTTCTCTTTCCTACCCTTTTCT
Solanum dulcamara genome assembly, chromosome: 11.
OX359262.1:49484435-49484454
AAAACCTTAAACCCTAACTCTCAATTCCAA49484435AACCTCCCTAAAACCCCAACTTTTCTTCTCTCTCTTTCCTACCCTTTTTT
Hibiscus tridactylites genome assembly, chromosome: 2.
OY288266.1:98503511-98503530
CACATAAAACAACCCTCAAACCAACTCTAA98503511AACCTCCCTAAAACCCCAACAAAACCCATTTCCGAAAATTAGCTTAAATC
1_Tdi_b3v08.
OA566357.1:87475-87494
TGAAAATGTGGATACACTTCCTATAATTAT87475AACCTCCCTAAAACCCCAACGTAATTAGTACATAAGCATATAACCCAAAC
2_Tcm_b3v08.
OE181414.1:89467-89486
ATAAAATGTGGGTACACTTCCTATAATTAT89467AACCTCCCTAAAACCCCAACGTAATTAGTGCATAAGCATATAACCCGAAC
Wolffia australiana isolate 7733 chromosome 2.
CP092601.1:14087587-14087606
CGCGTCTGGCTGCGGGGAGGGAAGAAGCAG14087587GTTGGGGTTTTAGGGAGGTTTTTGAGGCTCTTGAGTGGATATGACCCTAT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:72058335-72058354
AGGAATGGGTAGGAAAGAGAGAGGAGAAAA72058335GTTGGGGTTTTAGGGAGGTTTTGGAATTGAGAATTAGGGTTTAAGGTTTT
Digitaria exilis genome assembly, chromosome: 5B.
LR994613.1:38342268-38342287
GGCGCCGCGGGAGGGTTTTGTGGGGGAAAG38342268GTTGGGGTTTTAGGGAGGTTGGCGGCGGCGGACTCCCTCTCTCCCTCCCC
Hibiscus tridactylites genome assembly, chromosome: 19.
OY288283.1:36085423-36085442
GATTTAAGCTAATTTTCGGAAATGGGTTTT36085423GTTGGGGTTTTAGGGAGGTTTTAGAGTTGGTTTAAGGGCTATTTTAAGTG
1_Tps_b3v08.
OD001665.1:27938-27957
GTTCGGGTTATATGCTTATGTACTAATTAC27938GTTGGGGTTTTAGGGAGGTTATAATTATAGGAAGTGTATCCACATTTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACCTCCCTAAAACCCCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACCTCCCTAAAACCCCAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.890 | 0.882 | search_plus_done; http://172.18.8.135:50400/match?q=AACCTCCCTAAAACCCCAAC&k=0&no_gap=0&offset=0&limit=50
0.963 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGGGGTTTTAGGGAGGTT&k=0&no_gap=0&offset=0&limit=12
0.966 | 0.003 | cgi_end;

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