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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:22:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1508 from patent US 10760088.
MV631247.1:1965-1986
GCAGGAGACTACAATTATTACTTGGAGAAG1965AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Sequence 1509 from patent US 10760088.
MV631248.1:1974-1995
GCCGGAGACTACAATTATTACTTGGAGAAG1974AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Sequence 1512 from patent US 10760088.
MV631251.1:1690-1711
GCTGGCGACTACAATTATTATTTGGAGAAG1690AACCTGGAAGCTAGAGCAAAGGCGNTAGAGAGAGAAGCAGAGCTAGAAGAGA
Sequence 1515 from patent US 10760088.
MV631254.1:1617-1638
GCAGGAGACTACAATTATTACTTGGAGAAG1617AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Sequence 1508 from patent US 11111499.
MY423130.1:1965-1986
GCAGGAGACTACAATTATTACTTGGAGAAG1965AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Sequence 1509 from patent US 11111499.
MY423131.1:1974-1995
GCCGGAGACTACAATTATTACTTGGAGAAG1974AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Sequence 1512 from patent US 11111499.
MY423134.1:1690-1711
GCTGGCGACTACAATTATTATTTGGAGAAG1690AACCTGGAAGCTAGAGCAAAGGCGNTAGAGAGAGAAGCAGAGCTAGAAGAGA
Sequence 1515 from patent US 11111499.
MY423137.1:1617-1638
GCAGGAGACTACAATTATTACTTGGAGAAG1617AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Brassica oleracea var. viridis mRNA, clone: KALE-001B13, 3' end sequence.
DK515617.1:496-517
GCAGGAGACTACAATTATTACTTGGAGAAG496AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
Brassica oleracea var. viridis mRNA, clone: KALE-026L14, 3' end sequence.
DK525380.1:492-513
GCAGGAGACTACAATTATTACTTGGAGAAG492AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
Brassica oleracea var. viridis mRNA, clone: KALE-080J08, 3' end sequence.
DK545948.1:491-512
GCAGGAGACTACAATTATTACTTGGAGAAG491AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
Brassica oleracea var. viridis mRNA, clone: KALE-091B21, 3' end sequence.
DK549975.1:374-395
GCAGGAGACTACAATTATTACTTGGAGAAG374AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
Brassica oleracea var. viridis mRNA, clone: KALE-155H12, 3' end sequence.
DK574567.1:491-512
GCAGGAGACTACAATTATTACTTGGAGAAG491AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
21ACACMS_UP_014_G07_05NOV2004_051 Brassica napus 21ACACMS Brassica napus cDNA 5', mRNA sequence.
EE408270.1:241-262
GCAGGAGACTACAATTATTACTTGGAGAAG241AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
OL1750R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1750, mRNA sequence.
EH415237.1:394-415
GCAGGAGACTACAATTATTACTTGGAGAAG394AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
BNSCS3CT_UP_138_H09_10MAY2007_065 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV047664.1:482-503
GCAGGAGACTACAATTATTACTTGGAGAAG482AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0191556 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093555.1:465-486
GCAGGAGACTACAATTATTACTTGGAGAAG465AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0192006 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV094005.1:509-530
GCAGGAGACTACAATTATTACTTGGAGAAG509AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0192084 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV094083.1:506-527
GCAGGAGACTACAATTATTACTTGGAGAAG506AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0115251 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV109939.1:435-456
GCAGGAGACTACAATTATTACTTGGAGAAG435AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGTAGCTAGAAGAGA
0116183 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV110871.1:446-467
GCAGGAGACTACAATTATTACTTGGAGAAG446AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGCAG
0157271 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV173810.1:704-725
GCAGGAGACTACAATTATTACTTGGAGAAG704AACCTGGAAGCTAGAGCAAAGGCGGGTGGAGAGAGAAGCGGAANCTAGAAGA
0202606 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV188398.1:625-646
GCAGGAGACTACAATTATTACTTGGAGAAG625AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0090740 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV193256.1:505-526
GCAGGAGACTACAATTATTACTTGGAGAAG505AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0092544 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV195058.1:194-215
GCAGGAGACTACAATTATTACTTGGAGAAG194AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
0172639 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV204769.1:318-339
GCAGGAGACTACAATTATTACTTGGAGAAG318AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
0175479 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV206772.1:357-378
GCAGGAGACTACAATTATTACTTGGAGAAG357AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0175808 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV207101.1:245-266
GCAGGAGACTACAATTATTACTTGGAGAAG245AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
0178930 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV209153.1:150-171
GCAGGAGACTACAATTATTACTTGGAGAAG150AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
RR1BF20TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV528944.1:342-363
GCTGGCGACTACAATTATTATTTGGAGAAG342AACCTGGAAGCTAGAGCAAAGGCGATAGAGAGAGAAGCAGAGCTAGAAGAGA
RS2BB17TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW726237.1:311-332
GCTGGCGACTACAATTATTATTTGGAGAAG311AACCTGGAAGCTAGAGCAAAGGCGATAGAGAGAGAAGCAGAGCTAGAAGAGA
BR009530 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-014A08 5', mRNA sequence.
EX024886.1:256-277
GCCGGAGACTACAATTATTACTTGGAGAAG256AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
BR010171 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-022A07 5', mRNA sequence.
EX025527.1:256-277
GCCGGAGACTACAATTATTACTTGGAGAAG256AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
BR034023 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-046A05 5', mRNA sequence.
EX049379.1:52-73
GCCGGAGACTACAATTATTACTTGGAGAAG52AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
BR126812 normalized flower cDNA library NRFB Brassica rapa subsp. pekinensis cDNA clone NRFB-007G05 5', mRNA sequence.
EX115293.1:28-49
GGAGACTACAATTATTACTTGGAGAAG28AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
RS1BV41TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX887580.1:174-195
GCTGGCGACTACAATTATTATTTGGAGAAG174AACCTGGAAGCTAGAGCAAAGGCGATAGAGAGAAAGCAGAGCTAGAAGAGAA
a02_03na_1y.s 03na Brassica napus cDNA clone a02_03na_1y 5, mRNA sequence.
GT072673.1:366-387
GCAGGAGACTACAATTATTACTTGGAGAAG366AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTACAAGAGA
0268942 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO936772.1:495-516
GCCGGAGACTACAATTATTACTTGGAGAAG495AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_461.
FX663405.1:1867-1888
GCTGGCGACTACAATTATTATTTGGAGAAG1867AACCTGGAAGCTAGAGCAAAGGCGGTAGAGAGAGAAGCAGAGCTAGAAGAGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1436.
FX694188.1:1714-1735
GCCGGAGACTACAATTATTACTTGGAGAAG1714AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_548.
FX729880.1:1800-1821
GCTGGCGACTACAATTATTATTTGGAGAAG1800AACCTGGAAGCTAGAGCAAAGGCGATAGAGAGAGAAGCAGAGCTAGAAGAGA
KBrH106J13F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH106J13, genomic survey sequence.
DU114931.1:654-675
TCTCTGTTGGGGCAGTATTACTTGGAGAAG654AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Brassica rapa chromosome LG1 clone BAC 4H18, *** SEQUENCING IN PROGRESS ***.
AY382680.1:48523-48544
TCTCTGTTGGGGCAGTATTACTTGGAGAAG48523AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH067G23, complete sequence.
AC234756.1:16475-16496
TCTCTGTTGGGGCAGTATTACTTGGAGAAG16475AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCGGAGCTAGAAGAGA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:1041620-1041641
TCTATGTTGGGGCAGTATTACTTGGAGAAG1041620AACCTGGAAGCTAGAGCAAAGGCGGTGGAGAGAGAAGCAGAGCTAGAAGAGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:10589171-10589192
GATTCTCTCTGGCAGTATTATTTGGAGAAG10589171AACCTGGAAGCTAGAGCAAAGGCGGTAGAGAGAGAAGCAGAGCTAGAAGAGA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:10589171-10589192
GATTCTCTCTGGCAGTATTATTTGGAGAAG10589171AACCTGGAAGCTAGAGCAAAGGCGGTAGAGAGAGAAGCAGAGCTAGAAGAGA
OL1750F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1750, mRNA sequence.
EH415224.1:168-189
TCTCTTCTAGCTCTGCTTCTCTCTCCACCG168CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0190334 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092837.1:417-438
TCTCTTCTAGCTCCGCTTTTTTCTCCACCG417CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
0191420 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093474.1:406-427
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG406CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1264.
FX727335.1:302-323
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG302CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATAATTGTAGTCTCCTGC
TSA: Raphanus sativus RS24346 mRNA sequence.
JT808893.1:368-389
TCTCTTCTAGCTCTGCTTCTCTCTCTATCG368CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATAATTGTAGTCGCCAGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH105C12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234766.1:17772-17793
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG17772CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Raphanus sativus cultivar WK10039 clone RsH059P02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC255136.1:66957-66978
TCTCTTCTAGCTCTGCTTCTCTCTCTACCG66957CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAATAATACTGCCAGAGAGAATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080C09, complete sequence.
AC166741.1:50896-50917
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG50896CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:38224736-38224757
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG38224736CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:32798882-32798903
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG32798882CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:31892542-31892563
TCTCTTCTAGCTCCGCTTCTCTCTCCACCG31892542CCTTTGCTCTAGCTTCCAGGTTCTTCTCCAAGTAATACTGCCCCAACAGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACCTGGAAGCTAGAGCAAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACCTGGAAGCTAGAGCAAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.690 | 2.681 | search_plus_done; http://172.18.8.135:50400/match?q=AACCTGGAAGCTAGAGCAAAGG&k=0&no_gap=0&offset=0&limit=50
2.943 | 0.252 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTTGCTCTAGCTTCCAGGTT&k=0&no_gap=0&offset=0&limit=3
2.950 | 0.008 | cgi_end;

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