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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:42:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EL3230F Brassica embryo library (EL) Brassica napus cDNA clone EL3230 3', mRNA sequence.
CN828987.1:56-75
ATCCAAACAAAACATGAAGTCTGAAAATGA56AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
EL3230R Brassica embryo library (EL) Brassica napus cDNA clone EL3230 5', mRNA sequence.
CN828988.1:130-149
ATCCAAACAAAACATGAAGTCTGAAAATGA130AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
BNZB_RP_015_H02_30APR2004_002 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE557435.1:147-166
ATCCAAACAAAACATGAAGTCTGAAAATGA147AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
OL2737F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2737, mRNA sequence.
EH417232.1:48-67
ATCCAAACAAAACATGAAGTCTGAAAATGA48AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTTAACGG
OL3614F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3614, mRNA sequence.
EH418991.1:42-61
ATCCAAACAAAACATGAAGTCTGAAAATGA42AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTTAACGG
65JKBNMO_UP_049_H08_17JUL2006_050 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL590862.1:106-125
ATCCAAACAAAACATGAAGTCTGAAAATGA106AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
65JKBNMO_UP_059_A01_17JUL2006_015 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591577.1:40-59
ATCCAAACAAAACATGAAGTCTGAAAATGA40AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
65JKBNMO_UP_070_C09_18JUL2006_075 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL592454.1:107-126
ATCCAAACAAAACATAAAGCCTGAAAATGA107AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
65JKBNMO_UP_079_B02_18JUL2006_014 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL593041.1:664-683
ATCCAAACAAAACATAAAGCCTGAAAATGA664AACCTTGCAACGATCCGAAACCGAAACAAA
65JKBNMO_UP_081_E02_18JUL2006_008 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL593219.1:74-93
ATCCCAACAAAACATGAAGTCTGAAAATGA74AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
69JKME5D_T3_009_C09_28MAR2005_075 69JKME5D Brassica napus cDNA 5', mRNA sequence.
ES266901.1:103-122
ATCCAAACAAAACATGAAGTCTGAAAATGA103AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
BNARO2GH_T7_002_H10_23NOV2006_066 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES909761.1:127-146
ATCCAAACAAAACATGAAGTCTGAAAATGA127AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
0187476 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV091211.1:230-249
ATCCAAACAAAACATGAAGTCTGAAAATGA230AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATTTTTTAACGGT
0177113 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV098172.1:161-180
ATCCAAACAAAACATGAAGTCTGAAAATGA161AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGG
0125561 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV120249.1:110-129
ATCCAAACAAAACATGAAGTCTGAAAATGA110AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
0131457 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV126145.1:133-152
ATCCAAACAAAACATGAAGTCTGAAAATGA133AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
0197831 Brassica napus Stem library Brassica napus cDNA, mRNA sequence.
EV128323.1:16-35
TGAGTTCTGAAATGA16AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
0203343 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV137417.1:70-89
ATCCAAACAAAACATGAAGTCTGAAAATGA70AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
0213905 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV147971.1:149-168
ATCCAAACAAAACATGAAGTCTGAAAATGA149AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
0137313 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV148418.1:74-93
ATTCCAACAAAATCTGAAGTCTGAAAATGA74AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTCAACGGT
0078622 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV154761.1:134-153
ATCCAAACAAAACATGAAGTCTGAAAATGA134AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
0078703 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV154842.1:133-152
ATCCAAACAAAACATGAAGTCTGAAAATGA133AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
0154882 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV172698.1:147-166
ATCCAAACAAAACATGAAGTCTGAAAATGA147AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
BR105491 defected leaf cDNA library KHLD Brassica rapa subsp. pekinensis cDNA clone KHLD-29E03 3', mRNA sequence.
EX121661.1:126-145
ATCCAAACAAAACATGAAGTCTGAAAATGA126AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
BR124578 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-33B05 5', mRNA sequence.
EX140748.1:116-135
ATCCAAACAAAACATGAAGTCTGAAAATGA116AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
BR125109 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-41B11 5', mRNA sequence.
EX141279.1:174-193
ATCCAAACAAAACATGAAGTCTGAAAATGA174AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
BR125446 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-45G04 5', mRNA sequence.
EX141616.1:91-110
ATCCAAACAAAACATGAAGTCTGAAAATGA91AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
RS2C275JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900107.1:120-139
ATCCAAACCAAACATGAATCCTGAAAATGA120AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
RR2H389JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD969283.1:115-134
ATCCAAACAAAACATGAATCCTGAAAATGA115AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
RR2H589JQB RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD969430.1:136-155
ATCCAAACAAAACATGAATCCTGAAAATGA136AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
RR3GZ86JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD977139.1:110-129
ATCCAAACAAAACATGAATCCTGAAAATGA110AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF09M14, 3'-end sequence.
FY071452.1:92-111
ATCCAAACAAAACATGAAGTCTGAAAATGA92AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF31D05, 3'-end sequence.
FY423219.1:50-69
ATCCAAACAAAACATGAAGTCTGAAAATGA50AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
Raphanus sativus mRNA, clone: RSCR06I14, 5' end sequence.
FY441657.1:103-122
ATCCAAACAAAACATGAATCCTGAAAATGA103AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
Raphanus sativus mRNA, clone: RSCR14F21, 5' end sequence.
FY444133.1:51-70
ATCCAAACAAAACATGAATCCTGAAAATGA51AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
0231649 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO914887.1:191-210
ATCCAAACAAAACATAAACCCTCAAAATGA191AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCATTTAACGGT
0265858 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO936001.1:92-111
TCCTAACAAAACATAAAGCCCTCGAAATGA92AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCATTTAACGGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3612.
FX676153.1:122-141
ATCCAAACAAAACATGAATCCTGAAAATGA122AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4893.
FX714284.1:99-118
ATCCAAACAAAACATGAAGTCTGAAAATGA99AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_399.
FX762500.1:119-138
ATCCAAACAAAACATGAAGTCTGAAAATGA119AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1692.
FX769732.1:165-184
ATCCAAACAAAACATGAATACTGAAAATGA165AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
TSA: Raphanus sativus RS22489 mRNA sequence.
JT807036.1:160-179
ATCCAAACAAAACATGAATCCTGAAAATGA160AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:3615236-3615255
ATCCAAACAAAACATGAAGTCTGAAAATGA3615236AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:3646925-3646944
ATCCAAACAAAACATGAAGTCTGAAAATGA3646925AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCAGCAATTAACGGT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:4895568-4895587
ATCCAAACAAAACATAAAGCCTGAAAATGA4895568AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
Brassica rapa genome, scaffold: A03.
LR031572.1:3590820-3590839
ATCCAAACAAAACATAAAGCCTGAAAATGA3590820AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:3735170-3735189
ATCCAAACAAAACATGAATACTGAAAATGA3735170AACCTTGCAACGATCCGAAACAAAAACAACACAAACCAGCATTTAACGGT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:3601442-3601461
ATCCAAACAAAACATAAAGCCTGAAAATGA3601442AACCTTGCAACGATCCGAAACCGAAACAAAACAAACCATCTTTTAACGGT
Sequence 65462 from patent US 7569389.
GP695948.1:518-537
ACCGTTAATTGCTGGTTTGTTTTGTTTCGG518TTTCGGATCGTTGCAAGGTTTCATTTTCAGACTTCATGTTTTGTTTGGAT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a005M13_SP6.
AM057836.1:494-513
CCGTTAAAAAGATGGTTTGTTTTGTTTCGG494TTTCGGATCGTTGCAAGGTTTCATTTTCAGACTTCATGTTTTGTTTGGAT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a007D15_SP6.
AM058225.1:478-497
CCGTTAAAAAGATGGTTTGTTTTGTTTCGG478TTTCGGATCGTTGCAAGGTTTCATTTTCAGACTTCATGTTTTGTTTGGAT
KBrB125A23R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB125A23, genomic survey sequence.
ED533242.1:83-102
ACCGTTAATTGCTGGTTTGTTTTGTTTCGG83TTTCGGATCGTTGCAAGGTTTCATTTTCAGACTTCATGTTTTGTTTGGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH029F06, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC241115.1:70922-70941
ACCGTTAATTGCTGGTTTGTTTTGTTTCGG70922TTTCGGATCGTTGCAAGGTTTCATTTTCAGACTTCATGTTTTGTTTGGAT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:74342523-74342542
ACCGTTAAAAGATGGTTTGTTTTGTTTCGG74342523TTTCGGATCGTTGCAAGGTTTCATTTTCAGGCTTTATGTTTTGTTTGGAT
Zea mays clone 9606 mRNA sequence.
DQ244608.1:515-534
ACCGTTAATTGCTGGTTTGTTTTGTTTCGG515TTTCGGATCGTTGCAAGGTTTCATTTTCAGACTTCATGTTTTGTTTGGAT
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:31787112-31787131
ACCGTTAAATGCTGGTTTGTGTTGTTTTTG31787112TTTCGGATCGTTGCAAGGTTTCATTTTCAGTATTCATGTTTTGTTTGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACCTTGCAACGATCCGAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACCTTGCAACGATCCGAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.328 | 2.319 | search_plus_done; http://172.18.8.135:50400/match?q=AACCTTGCAACGATCCGAAA&k=0&no_gap=0&offset=0&limit=50
2.424 | 0.097 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCGGATCGTTGCAAGGTT&k=0&no_gap=0&offset=0&limit=2
2.429 | 0.005 | cgi_end;

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