GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Litopenaeus vannamei mRNA sequence.
JP430603.1:679-698

GGAACTTTCACATACACTATCTAATAACGA679AACGAAAATGGACGAAAACGAAAGAACTCGACGTCTAGAACAGTGAATGA

Chrysanthemum makinoi genome assembly, segment: 0.
OU343216.1:6769719-6769738

AAAAACGACTAAAACGTGAAAAAACATGAA6769719AACGAAAATGGACGAAAACGTAAAAACCGCATAAAAACGTGAAAAACGGA

Chrysanthemum makinoi genome assembly, chromosome: 3.
OU343219.1:49656446-49656465

TCTGAAAACGGATGAAAACGTATCAAAACA49656446AACGAAAATGGACGAAAACGTATGAAAAATGGATGAAAACGTAAGAAAAC

Chrysanthemum makinoi genome assembly, chromosome: 3.
OU343219.1:176736022-176736041

GTCCTATTTTTTTTTAAATCATAAAAGACG176736022AACGAAAATGGACGAAAACGTAAAAATACAGACGAAACGTAAAATACGGA

Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:239190986-239191005

GTCAGAAACGTATGAAAACGAACGAAAACG239190986AACGAAAATGGACGAAAACGTAAGAAAACGGACGAATTCGTATGAAAAAT

Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:270697758-270697777

CACAAAAGGATGAAAACGCAAAAAAACTAA270697758AACGAAAATGGACGAAAACGAAATAAACATTTAAAACGGAAAAAAAAATA

Chrysanthemum makinoi genome assembly, chromosome: 6.
OU343222.1:151381508-151381527

TAAGAAAACGGACGAAAATGTAAGAAAACG151381508AACGAAAATGGACGAAAACGTAATAAAACAGACGAAAACGGACGAAAACG

Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:120691802-120691821

GTAAGAAACCGGACGAAAACGTATAAAACG120691802AACGAAAATGGACGAAAACGTATGAAAACAAACGAAAATGTATGAAAGCG

Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:253591790-253591809

TATGAAAGCATAAAAACAAGTATGAAAATG253591790AACGAAAATGGACGAAAACGTATGAATAATGAACGAAAACATAAGAAAAC

Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:304212141-304212160

TCTGACAACGGACGAAAACGTATAAAAACG304212141AACGAAAATGGACGAAAACGGACAAAAATGTCTAAAAACAGACGAAAGCG

Euspilapteryx auroguttella genome assembly, chromosome: 12.
OX637653.1:8894604-8894623

CGTGGCGGCGACGTATTCATGTTCGCTACT8894604AACGAAAATGGACGAAAACGTTTTTTGAATTGATGCAACAAACTTGCTTG

Cerastis leucographa genome assembly, chromosome: 11.
OY720356.1:10187036-10187055

CTGCCTGACCTTTTGACGAATACGTCATGA10187036AACGAAAATGGACGAAAACGTTCATGTTGTTGAAATAAATTGTTTCTTAG

Thysanoteuthis rhombus genome assembly, chromosome: 5.
OY735202.1:67873139-67873158

TTTGGGGCACTGTACAGTTTTTCGAAATTA67873139AACGAAAATGGACGAAAACGAATTTTCATTGATTTTTTAAAAATATTCCT

Hololepta plana genome assembly, chromosome: 5.
OY968836.1:8256587-8256606

ATTAAATCCGATGAATTCGATTTGTAAATG8256587AACGAAAATGGACGAAAACGAAACTGTAAAGATTAAATTACGACGTTTAT

Chrysanthemum makinoi genome assembly, chromosome: 1.
OU343217.1:317161643-317161662

AGCTTTCATACGTTTTCGTTTGTTTTCATA317161643CGTTTTCGTCCATTTTCGTTAGTTTTCAACCATTTTCGTCCATTTTTTAT

Chrysanthemum makinoi genome assembly, chromosome: 4.
OU343220.1:84003102-84003121

GTCTTTTTTTACGTTTTCGGTAGTTTTTTA84003102CGTTTTCGTCCATTTTCGTTTTCGTCCGATTTTTACGTTTTGTCTCTTTT

Chrysanthemum makinoi genome assembly, chromosome: 4.
OU343220.1:123833891-123833910

TGTTTTCTTACGTTTTTGTCCGTTTTCATA123833891CGTTTTCGTCCATTTTCGTTCGTTTTCATACGTTTTCGTCCAGTTTCATC

Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:4440866-4440885

GTTTTCTTACGTTTTCGTTCATTATTCATA4440866CGTTTTCGTCCATTTTCGTTCGTTTTCATACTTGTTTTTACGCTTTCATA

Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:120076741-120076760

GTTTTCTTACGTTTTCTTTCATTATTCATA120076741CGTTTTCGTCCATTTTCGTTCGTTTTCATACTCTTTTTAACGCTTTCATA

Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:244860615-244860634

CGTTTTCATACGTTTTTGTCTGTTTTCTTA244860615CGTTTTCGTCCATTTTCGTTCGTTTTCATACGTTTTCGTCCGTTTTCATC

Chrysanthemum makinoi genome assembly, chromosome: 6.
OU343222.1:3388699-3388718

CTTTTTCTTTCGTTTTTTTCATTATTCATA3388699CGTTTTCGTCCATTTTCGTTGTTTTTTCATACGTTTTTGTCTGTTTTCAT

Chrysanthemum makinoi genome assembly, chromosome: 6.
OU343222.1:190138068-190138087

GTTTTCTTACGTTTTCGTCCATTATTCATA190138068CGTTTTCGTCCATTTTCGTTCGTTTTCATACGTTTTCGTCCGTTTTCATA

Chrysanthemum makinoi genome assembly, chromosome: 6.
OU343222.1:284847019-284847038

GTTTTCTTACGTTTTCGTTCATTATTCATA284847019CGTTTTCGTCCATTTTCGTTCGTTTTCATACATTTTCATTTGTTTTCATA

Chrysanthemum makinoi genome assembly, chromosome: 6.
OU343222.1:301603625-301603644

TGTTTTCTTACGTTTTCGTTTGTTTTCATA301603625CGTTTTCGTCCATTTTCGTTCGTTTTCATACGATTTCGTCCGTTTTCTTT

Chrysanthemum makinoi genome assembly, chromosome: 8.
OU343224.1:29282555-29282574

GTTTTTTTACGTCTCTGTCCATTATTCATA29282555CGTTTTCGTCCATTTTCGTTTGTTTTCATCCGTTTTCATATGGGTTATTA

Chrysanthemum makinoi genome assembly, chromosome: 8.
OU343224.1:193982725-193982744

CGTTTTCTTATGTTTGCATCTGTTTTCTAA193982725CGTTTTCGTCCATTTTCGTTTGTTTTCTTACGTTTCTGACTATCGCAAGT

Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:67993731-67993750

CGTTTTCATACGTTTTCGCCCGTTATCTTA67993731CGTTTTCGTCCATTTTCGTTTGTTTTCATACGTTTTCGTCCGTTTTCATA

Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:68021903-68021922

CTCGCTTTCACATAATGCTCGTTATTCTTA68021903CGTTTTCGTCCATTTTCGTTTGTTTTCATAATTTCGTCCGCTTTCATACT

Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:93834274-93834293

GTTTTCTTACGTTTTCGTTCATTATTCATA93834274CGTTTTCGTCCATTTTCGTTTGTTTTCATACGTTTTCGTCCGTTTTCATA

Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:101248983-101249002

TCGTTTTCGTTCGTTTTCGCCCGTTTCATA101248983CGTTTTCGTCCATTTTCGTTCATTTACATATGTTTTCGTCCGTTTTCGTT

Siphonodentalium dalli isolate Sc116.8C chromosome V.
CP136065.1:211808163-211808182

ACTCGGTCAATGGGGAAAGTTACACGATGA211808163CGTTTTCGTCCATTTTCGTTGAAATCGACACGGTGACACCTTTGAATGAA

Autographa pulchrina genome assembly, chromosome: 8.
FR997770.1:6857229-6857248

TTGATGAATAATTTGTTCTTCAGAAACAAA6857229CGTTTTCGTCCATTTTCGTTGACGTAAAATCCAATAATAAATTGTATTGA

Sepia lycidas genome assembly, chromosome: 10.
OZ010580.1:48853962-48853981

ATTTCAGAATTTTTCACTACCAAGGATGTT48853962CGTTTTCGTCCATTTTCGTTCTCTGTCTATCTCAGTCGGTTCATACCTAT

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Debug Info:

0.009 | 0.009 | search_start;
0.121 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=AACGAAAATGGACGAAAACG&k=0&no_gap=0&offset=0&limit=50
0.159 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=CGTTTTCGTCCATTTTCGTT&k=0&no_gap=0&offset=0&limit=36
0.172 | 0.013 | cgi_end;

Summary:

Results:

Data Export:

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