GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:03:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR1CP78TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749681.1:545-566
TGCTTGGAGAGGTTCAAAGGAAAGCTCGTT545AACGTAGTCGATGGGCTTGAGTTGCACACTGGTGTTTTCAGCGCTGTTGAGC
RS2EI44TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941453.1:537-558
TGCTTGGAGAGGTTCAAAGGAAAGCTCGTT537AACGTAGTCGATGGGCTTGAGTTGCACACTGGTGTTTTCAGCGCTGTTGAGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8568.
FX669629.1:990-1011
GCTCAACAGCGCTGAAAACACCAGTGTGCA990ACTCAAGCCCATCGACTACGTTAACGAGCTTTCCTTTGAACCTCTCCAAGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACGTAGTCGATGGGCTTGAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACGTAGTCGATGGGCTTGAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.229 | 0.220 | search_plus_done; http://172.18.8.135:50400/match?q=AACGTAGTCGATGGGCTTGAGT&k=0&no_gap=0&offset=0&limit=50
0.255 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=ACTCAAGCCCATCGACTACGTT&k=0&no_gap=0&offset=0&limit=48
0.256 | 0.001 | cgi_end;

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