GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 22:16:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 67743 from Patent WO2008034648.
FB848470.1:667-686
GAGATTGTAATCACCAACCAAACCACCATC667AACTACAATGTCTCCAATGCTCTTGATCAGGCTGTTGATTTTAGAAGCAG
Sequence 93987 from Patent WO2008034648.
FB874714.1:667-686
GAGATTGTAATCACCAACCAAACCACCATC667AACTACAATGTCTCCAATGCTCTTGATCAGGCTGTTGATTTTAGAAGCAG
Sequence 67743 from Patent EP2090662.
HB718529.1:667-686
GAGATTGTAATCACCAACCAAACCACCATC667AACTACAATGTCTCCAATGCTCTTGATCAGGCTGTTGATTTTAGAAGCAG
Sequence 93987 from Patent EP2090662.
HB744773.1:667-686
GAGATTGTAATCACCAACCAAACCACCATC667AACTACAATGTCTCCAATGCTCTTGATCAGGCTGTTGATTTTAGAAGCAG
LjNEST49e2r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
BI417290.1:169-188
GAGATTGTAATCACCAACCAAACCACCATC169AACTACAATGTCTCCAATGCTCTTGATCAGGCTGTTGATTTTAGAAGCAG
Lotus japonicus nin gene for nodule inception protein.
AJ238956.1:911-930
GAGATTGTAATCACCAACCAAACCACCATC911AACTACAATGTCTCCAATGCTCTTGATCAGGTACCTAGCTACTTTACTTG
Lotus corniculatus var. japonicus mRNA for nodule inception protein (nin).
AJ239041.1:780-799
GAGATTGTAATCACCAACCAAACCACCATC780AACTACAATGTCTCCAATGCTCTTGATCAGGCTGTTGATTTTAGAAGCAG
Lotus japonicus genomic DNA, chromosome 2, clone: LjT08G20, TM0102b.
AP004543.1:15830-15849
GAGATTGTAATCACCAACCAAACCACCATC15830AACTACAATGTCTCCAATGCTCTTGATCAGGTACCTAGCTACTTTACTTG
Lotus japonicus genomic DNA, chromosome 2, clone: LjB66E01, BM1341.
AP008004.2:125474-125493
CAAGTAAAGTAGCTAGGTACCTGATCAAGA125474GCATTGGAGACATTGTAGTTGATGGTGGTTTGGTTGGTGATTACAATCTC
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:496863-496882
CAAGTAAAGTAGCTAGGTACCTGATCAAGA496863GCATTGGAGACATTGTAGTTGATGGTGGTTTGGTTGGTGATTACAATCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACTACAATGTCTCCAATGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTACAATGTCTCCAATGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.184 | 0.175 | search_plus_done; http://172.18.8.135:50400/match?q=AACTACAATGTCTCCAATGC&k=0&no_gap=0&offset=0&limit=50
0.217 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=GCATTGGAGACATTGTAGTT&k=0&no_gap=0&offset=0&limit=42
0.218 | 0.001 | cgi_end;

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