GGGenome | Results

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2025-04-10 21:54:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Camellia sinensis mRNA, clone: LR11C01, 5' end sequence, expressed in lateral roots.
FS944108.1:195-215

TTCGCAAGGTCTACGGCATTCTCGCCGCTC195AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG

Camellia sinensis mRNA, clone: LR16H07, 5' end sequence, expressed in lateral roots.
FS944565.1:101-121

TTCGCAAGGTCTACGGCATTCTCGCCGCTC101AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG

EST0804 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_04_92.M13+_D12.ab1, mRNA sequence.
GE650477.1:223-243

TTCGCAAGGTCTACGGCATTCTCGCCGCTC223AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG

EST1110 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_20.M13+_D03.ab1, mRNA sequence.
GE650783.1:235-255

TTCGCAAGGTCTACGGCATTCTCGCCGCTC235AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCA

EST1768 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_17_91.M13+_C12.ab1, mRNA sequence.
GE651441.1:221-241

TTCGCAAGGTCTACGGCATTCTCGCCGCTC221AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG

EST3266 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_39_56.M13+_H07, mRNA sequence.
GE652939.1:211-231

TTCGCAAGGTCTACGGCATTCTCGCCGCTC211AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG

Tea212_2006-02-10_1/Tea212_A01_008_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK476090.1:43-63

TTCGCAAGGTCTACGGCATTCTCGCCGCTC43AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG

Camellia_272 Dixie Knight seed cDNA library Camellia japonica cDNA, mRNA sequence.
JK711318.1:167-187

TTCGCAAGGTCTACGGCATTCTCGCCGCTC167AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTACCCCCCCG

TSA: Camellia sinensis tea_c6707 mRNA sequence.
KA286107.1:231-251

TTCGCAAGGTCTACGGCATTCTCGCCGCTC231AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTACCCCCCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.798 | 0.789 | search_plus_done; http://172.18.8.135:50400/match?q=AACTCGTCCTCACCACCGTCG&k=0&no_gap=0&offset=0&limit=50
0.830 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=CGACGGTGGTGAGGACGAGTT&k=0&no_gap=0&offset=0&limit=41
0.830 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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