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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 06:10:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chanos chanos genome assembly, chromosome: 16.
LR697121.1:811017-811036
TCTGAGTTAATGGAAGCTCCCAGCAAATGC811017AAGAGATGAAATTTGGCAGCGATAACAGATGTTGGTGTTGGTGACATAAA
GR__Eb020K05.f GR__Eb Gossypium raimondii cDNA clone GR__Eb020K05 5', mRNA sequence.
CO118328.1:152-171
ATATATATTATAAAATTTACCTATGGCCTC152AAGAGATGAAATTTGGCAGCTAACTGTTACACTCAAAGAAACAATGAGGC
GR__Eb12E10.r GR__Eb Gossypium raimondii cDNA clone GR__Eb12E10 3', mRNA sequence.
CO127614.1:310-329
ATATATATTATAAAATTTACCTATGGCCTC310AAGAGATGAAATTTGGCAGCTAACTGTTACACTCAAAGAAACAATGAGGC
GR__Eb43N12.f GR__Eb Gossypium raimondii cDNA clone GR__Eb43N12 5', mRNA sequence.
CO131509.1:319-338
ATATATATTATAAAATTTACCTATGGCCTC319AAGAGATGAAATTTGGCAGCTAACTGTTACACTCAAAGAAACAATGAGGC
Theobroma cacao, mRNA sequence (KZ0AAK6YK22FM1).
CU534993.1:164-183
TATATAAAATTTACCTATATCTATGGCCTC164AAGAGATGAAATTTGGCAGCTACCTGTTACACTCAAAGAAACGTCGAAGC
G10_427264.82.S1104123329.anther-SP12274 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK702979.1:311-330
ATATATATTATAAAATTTACCTATGGCCTC311AAGAGATGAAATTTGGCAGCTAACTGTTACACTCAAAGAAACAATGAGGC
H06_430853.90.S1104142857.anther-SP14682 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK703833.1:207-226
ATATATATTATAAAATTTACCTATGGCCTC207AAGAGATGAAATTTGGCAGCTAACTGTTACACTCAAAGAAACAATGAGGC
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:53517956-53517975
ATATATATTATAAAATTTACCTATGGCCTC53517956AAGAGATGAAATTTGGCAGCTAACTGTTACACTCAAACAAACAATGAGGC
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:116975502-116975521
ATATATATTATAAAATTTACCTATGGCCTC116975502AAGAGATGAAATTTGGCAGCTAACTGTTACACTCAAAGAAACAATGAGGC
Microcos paniculata chromosome 1b.
CP131447.1:2904104-2904123
AAATTTACCTATTTGATCTATGGCGGCCTC2904104AAGAGATGAAATTTGGCAGCTACCCGTTACACTCAAAGAAACGTCGAGGC
Microcos paniculata chromosome 1a.
CP131456.1:2914387-2914406
AAATTTACCTATTTGATCTATGGCGGCCTC2914387AAGAGATGAAATTTGGCAGCTACCCGTTACACTCAAAGAAACGTCGAGGC
Theobroma cacao isolate Sca6 chromosome 7.
CP139297.1:5197288-5197307
TATATAAAATTTACCTATATCTATGGCCTC5197288AAGAGATGAAATTTGGCAGCTACCTGTTACACTCAAAGAAACGTCGAAGC
Gossypium hirsutum clone NBRI_TRANS-012 microsatellite sequence.
JX963682.1:155-174
ATATATATTATAAAATTTACCTATGGCCTC155AAGAGATGAAATTTGGCAGC
Theobroma cacao genome assembly, chromosome: VII.
LT594794.1:4397556-4397575
TATATAAAATTTACCTATATCTATGGCCTC4397556AAGAGATGAAATTTGGCAGCTACCTGTTACACTCAAAGAAACGTCGAAGC
Theobroma cacao genome assembly, chromosome: 7.
OY284444.1:5031061-5031080
TATATAAAATTTACCTATATCTATGGCCTC5031061AAGAGATGAAATTTGGCAGCTACCTGTTACACTCAAAGAAACGTCGAAGC
Theobroma cacao genome assembly, chromosome: 7.
OY284464.1:4936015-4936034
TATATAAAATTTACCTATATCTATGGCCTC4936015AAGAGATGAAATTTGGCAGCTACCTGTTACACTCAAAGAAACGTCGAAGC
Stomorhina lunata genome assembly, chromosome: 3.
OW121742.1:37214100-37214119
TCACCCGCCCATCTCAAACAGCAAAACCTA37214100AAGAGATGAAATTTGGCAGCGGTAATTTCGTTGATCTACAAATCCAATAC
GA__Ea0028H22f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0028H22f, mRNA sequence.
BG445425.1:468-487
GCCTCATTGTTTCTTTGAGTGTAACAGTTA468GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
GA__Ea0017A22r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0017A22r, mRNA sequence.
BM359142.1:572-591
GCCTCATTGTTTCTTTGAGTGTAACAGTTA572GCTGCCAAATTTCATCTCTTGAGGCCAATAGGTAAATTTATAATATATAT
GR__Eb020K05.r GR__Eb Gossypium raimondii cDNA clone GR__Eb020K05 3', mRNA sequence.
CO118329.1:656-675
GCCTCATTGTTTCTTTGAGTGTAACAGTTA656GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
Theobroma cacao, mRNA sequence (KZ0AAK9YG16FM1).
CU535353.1:270-289
GCTTCGACGTTTCTTTGAGTGTAACAGGTA270GCTGCCAAATTTCATCTCTTGAGGCCATAGATATAGGTAAATTTTATATA
Theobroma cacao, mRNA sequence (KZ0AAN2YH18FM1).
CU615240.1:69-88
GCTTCGACGTTTCTTTGAGTGTAACAGGTA69GCTGCCAAATTTCATCTCTTGAGGCCATAGATATAGGTAAATTTTATATA
G.hir-15-20 DAA bolls irrigated 1041 15-20 DAA bolls from irrigated plants Gossypium hirsutum cDNA, mRNA sequence.
DN802838.1:330-349
GCCTCATTGTTTCTTTGAGTGTAACAGTTA330GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
GH_TMIRS_114_C10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW507431.1:431-450
GCCTCATTGTTTCTTTGAGTGTAACAGTTA431GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAC
UFL_201_79 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES811590.1:310-329
GCCTCATTGTTTCTTTGAGTGTAACAGTTA310GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
UFL_047_27 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES838797.1:472-491
GCCTCATTGTTTCTTTGAGTGTAACAGTTA472GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
2P47-A11-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG451539.1:273-292
GCCTCATTGTTTCTTTGAGTGTAACAGTTA273GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
A10-057A10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK791315.1:479-498
GCCCCATTGTTTCTTTGAGTGTAACAGTTA479GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
Gossypioides kirkii chromosome KI_01.
CP032244.1:5280773-5280792
GCCCCATTGTTTCTTTGAGTGTAACAGTTA5280773GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTCATAATATATAT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:6715974-6715993
GCCTCATTGTTTCTTTGAGTGTAACAGTTA6715974GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:8679873-8679892
GCCTCATTGTTTCTTTGAGTGTAACAGTTA8679873GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:9099226-9099245
GCCTCATTGTTTCTTTGAGTGTAACAGTTA9099226GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATAAAT
Theobroma grandiflorum isolate C1074 chromosome 7.
CP142133.1:31053360-31053379
GCTTCGACGTTTCTTTGAGTGTAACAGGTA31053360GCTGCCAAATTTCATCTCTTGAGGCCATAGATATAGGTAAAATTTAATAT
Gossypium hirsutum clone NBRI_TRANS-922 microsatellite sequence.
JX964653.1:15-34
GAGTGTAACAGTTA15GCTGCCAAATTTCATCTCTTGAGGCCATAGGTAAATTTTATAATATATAT
Triticum aestivum genome assembly, chromosome: 1A.
LR862508.1:108147845-108147864
TCAATATTCTATCACCATGTCCTAAACCTC108147845GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR862529.1:109805068-109805087
TCAATATTCTATCACCATGTCCTAAACCTC109805068GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR862550.1:113521101-113521120
TCAATATTCTATCACCATGTCCTAAACCTC113521101GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR865458.1:108651016-108651035
TCAATATTCTATCACCATGTCCTAAACCTC108651016GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR865479.1:112396470-112396489
TCAATATTCTATCACCATGTCCTAAACCTC112396470GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR865500.1:108567536-108567555
TCAATATTCTATCACCATGTCCTAAACCTC108567536GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR865739.1:104569666-104569685
TCAATATTCTATCACCATGTCCTAAACCTC104569666GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR865760.1:113431613-113431632
TCAATATTCTATCACCATGTCCTAAACCTC113431613GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR877309.1:109087602-109087621
TCAATATTCTATCACCATGTCCTAAACCTC109087602GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LR878435.1:109325470-109325489
TCAATATTCTATCACCATGTCCTAAACCTC109325470GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
LS992080.1:109003849-109003868
TCAATATTCTATCACCATGTCCTAAACCTC109003849GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum turgidum subsp. durum genome assembly, chromosome: 1A.
LT934111.1:106680719-106680738
TCAATATTCTATCACCATGTCCTAAACCTC106680719GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGCCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
OU015721.1:117442993-117443012
TCAATATTCTATCACCATGTCCTAAACCTC117442993GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
OU343169.1:119459696-119459715
TCAATATTCTATCACCATGTCCTAAACCTC119459696GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
OU963872.1:112031830-112031849
TCAATATTCTATCACCATGTCCTAAACCTC112031830GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
OV100737.1:109849965-109849984
TCAATATTCTATCACCATGTCCTAAACCTC109849965GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Triticum aestivum genome assembly, chromosome: 1A.
OW530310.1:109849965-109849984
TCAATATTCTATCACCATGTCCTAAACCTC109849965GCTGCCAAATTTCATCTCTTTTGAAGTTGTTTTGGTCAGGTTCAAAAATG
Theobroma cacao genome assembly, chromosome: 7.
OY284454.1:23914336-23914355
GCTTCGACGTTTCTTTGAGTGTAACAGGTA23914336GCTGCCAAATTTCATCTCTTGAGGCCATAGATATAGGTAAATTTTATATA
Crataerina pallida genome assembly, chromosome: 5.
OX453293.1:16538620-16538639
AGTTTTTGTTAAGTTTCTCAAATGGACGTG16538620GCTGCCAAATTTCATCTCTTACAGTTTTTAAGTGATACGAAAAAATGCTT
Eustalomyia histrio genome assembly, chromosome: 3.
OX456525.1:134825120-134825139
CTAAGATTTATCATCTCGCGCAATTACAGT134825120GCTGCCAAATTTCATCTCTTAATAGAAACGATTCCTGAGTGTTGTTTCTC

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