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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 05:46:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OPR03821 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A3248.seq, mRNA sequence.
EL693763.1:22-45
ACGAGTTCCTGGCGGTGATGC22AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGTCAGGACTCGAGCAGAGCG
Elaeis guineensis EST, clone (6lib)_isotig26887.
LM619612.1:1158-1181
CCTTCAGCGCCGAGTTCCTGGCGGTGATGC1158AAGAGATGATCCGCAACGAGGTGAGAAACTACATGTCGGGACTGGAGCAGAGCG
Elaeis guineensis EST, clone (6lib)_isotig11125.
LM620316.1:1118-1141
CCTTCAGCGCCGAGTTCCTGGCGGTGATGC1118AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGTCAGGACTCGAGCAGAGCG
TSA: Elaeis guineensis isotig11550.Elguifruit mRNA sequence.
JO098777.1:257-280
CCTTCAGCGCCGAGTTCCTGGCGGTGATGC257AAGAGATGATCCGCAACGAGGTGAGAAACTACATGTCGGGACTGGAGCAGAGCG
Elaeis guineensis clone estEgSNP18 sucrose responsive element-binding protein (SREBP) mRNA, complete cds.
JX438713.1:1079-1102
CCTTCAGCGCCGAGTTCCTGGCGGTGATGC1079AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGTCAGGACTCGAGCAGAGCG
Musa troglodytarum cultivar karat chromosome 4.
CP097506.1:8593556-8593579
CTTTTAGCGCCGAATTCCTGGCGATCATGC8593556AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGGCGGGCCTGGAGCAGAGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 4.
CP126373.1:6845552-6845575
CTTTTAGCGCCGAATTCCTGGCGATCATGC6845552AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGGCGGGACTGCAGCAGAGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 15.
CP126384.1:6864318-6864341
CTTTTAGCGCCGAATTCCTGGCGATCATGC6864318AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGGCGGGACTGCAGCAGAGCC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:6804529-6804552
CTTTTAGCGCCGAATTCCTGGCGATCATGC6804529AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGGCGGGACTGCAGCAGAGCC
Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:7291766-7291789
CTTTTAGCGCCGAATTCCTGGCGATCATGC7291766AAGAGATGATCCGCAACGAGGTGAGGAGCTACATGGCGGGACTGCAGCAGAGCC
TSA: Elaeis guineensis isotig11295.Elguifruit mRNA sequence.
JO098522.1:385-408
CGCTCTGCTCGAGTCCTGACATGTAGCTCC385TCACCTCGTTGCGGATCATCTCTTGCATCACCGCCAGGAACTCGGCGCTGAAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGAGATGATCCGCAACGAGGTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGAGATGATCCGCAACGAGGTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.301 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=AAGAGATGATCCGCAACGAGGTGA&k=0&no_gap=0&offset=0&limit=50
0.328 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=TCACCTCGTTGCGGATCATCTCTT&k=0&no_gap=0&offset=0&limit=40
0.329 | 0.001 | cgi_end;

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