GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 02:16:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus chromosome 1, clone RP24-397O8, complete sequence.
AC103635.8:132675-132693
TTTTATGGTCAGTTTTGGAGAAGGTCCTGT132675AAGGTGCTGGGAAGAAGGTATATTCTTTTGTTTTAGGATAAAATGTTCT
Mus musculus chromosome 1, clone RP23-46D11, complete sequence.
AC110029.8:18545-18563
TTTTATGGTCAGTTTTGGAGAAGGTCCTGT18545AAGGTGCTGGGAAGAAGGTATATTCTTTTGTTTTAGGATAAAATGTTCT
Sciurus vulgaris genome assembly, chromosome: 12.
LR738623.1:74550706-74550724
AGGGTTCGATCATTAACCCAGGTAAGGCCC74550706AAGGTGCTGGGAAGAAGGTGGGCCATATGCCAGGTTGTGGAATTGACTC
Acomys kempi genome assembly, chromosome: 1.
OU015355.1:787675-787693
GTACATTTTCAGTTTTCGAGAAGGTTCCAT787675AAGGTGCTGGGAAGAAGGTGTATTCTTTTGTCTTTGGTGAAATACTATA
Acomys dimidiatus genome assembly, chromosome: 1.
OU015374.1:790026-790044
GTACATTTTCAATTTTGGAGAAGGTTCCAT790026AAGGTGCTGGGAAGAAGGTATATTCTTTTGTCTTTGGTGAAATATTATA
Acomys percivali genome assembly, chromosome: 1.
OU015742.1:912425-912443
GTACATTTTCAGTTTTGGAGAAGGTTCCAT912425AAGGTGCTGGGAAGAAGGTATATTTTTTTGTCTTTGGGTGAAATATTAT
Mus musculus molossinus genome assembly, chromosome: 7.
OW971664.1:44724969-44724987
TAATGTGGTCAATTTTGGAGAAGGTACCAT44724969AAGGTGCTGGGAAGAAGGTATATCATTTTGTTTTAGGATAAAATGTTCT
Apodemus sylvaticus genome assembly, chromosome: 1.
OX359297.1:87603643-87603661
GTATGTGGTTAGTTTTGGAGAAATTTCCAA87603643AAGGTGCTGGGAAGAAGGTCTATTCTCTTGTGTTTGGGTGAAGTGTTCT
Apodemus sylvaticus genome assembly, chromosome: 5.
OX359301.1:134482278-134482296
GCATATGGTCTGTTTTGGAAAAAGTACTGT134482278AAGGTGCTGGGAAGAAGGTATATTCTTTTTGTTTTAGGATAAAATGTTC
Apodemus sylvaticus genome assembly, chromosome: X.
OX359302.1:84568138-84568156
TTATATGCTCAGTTTTGGAGAGGGTACCAT84568138AAGGTGCTGGGAAGAAGGTATATTCTTTTGTGGAATGTTCTATAAATAT
Onychomys leucogaster genome assembly, chromosome: 1.
OX460418.1:24857865-24857883
TTTTGTGGTCAGTTTTGGAGAAAGTTCTGT24857865AAGGTGCTGGGAAGAAGGTGTATTCTTCTGTTAGCTACATTTGGTTTGT
Mobula hypostoma genome assembly, chromosome: 12.
OY992603.1:46779701-46779719
GAAATGGTTGCCACAAGAGGACACAGGTTT46779701AAGGTGCTGGGAAGAAGGTACAGGGGAGATGTCAGGGGTAAGTTGTTTA
Mobula hypostoma genome assembly, chromosome: 22.
OY992614.1:6325369-6325387
GAAAGGGCAAACATGAGCGGTCACAGTTTT6325369AAGGTGCTGGGAAGAAGGTACAGAGGAGATGTCAGGGGTAACAGAGAGT
Mobula hypostoma genome assembly, chromosome: 23.
OY992615.1:35607526-35607544
GAAATGGCTAGCAAGAGAGGGCACAGTTTT35607526AAGGTGCTGGGAAGAAGGTACAGAGGAGATGTCAGGGGTAAGTTTTTTA
Rattus norvegicus clone CH230-15A6, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC117882.5:110423-110441
TATGTGGTTAGTTTGGGGGAAATTTTTCAA110423AAGGTGCTGGGAAGAAGGTAAATTCTCTTGTGTTTGGGTGAAGCATTCT
Rattus norvegicus clone CH230-201A23, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC128459.3:130-148
TATGTGGTTAGTTTGGGGGAAATTTTTCAA130AAGGTGCTGGGAAGAAGGTAAATTCTCTTGTGTTTGGGTGAAGCATTCT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:30164656-30164674
AGAGAGAGAGAGAGAGGGAGAGAGGACTAG30164656AAGGTGCTGGGAAGAAGGTAGCATTGTACAAGCTGTTGCTGCAACCTTC
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:30233687-30233705
GTATATAAGGAGAGAGAGAGAGAGGACTAG30233687AAGGTGCTGGGAAGAAGGTAGCATTGTACAAGCTGTTGCTGCAACCTTC
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:30263169-30263187
AGAGAGAGAGAGAGAGAGAGAGAGAACTAG30263169AAGGTGCTGGGAAGAAGGTAGCATTGTACAAGCTGTTGCTGCAACCTTC
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:31901518-31901536
AGAGAGAGAGAGAGGGGGGGGGGGGACTAG31901518AAGGTGCTGGGAAGAAGGTAGCATTGTACAAGCTGTTGCTGCAACCTTC
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:26129358-26129376
AGAGAGAGAGAAAGAGAGAGAGGGAACTAG26129358AAGGTGCTGGGAAGAAGGTAGCATTGTACAAGCTGTTGCTGCAACCTTC
Sepioteuthis lessoniana genome assembly, chromosome: 22.
OY757925.1:30922602-30922620
AAGCTAAATTTAGGTGCAGACAAATTTTAT30922602AAGGTGCTGGGAAGAAGGTGTAAAAAAAATAAAATATTGGGGGTGATTT
Mouse DNA sequence from clone RP23-246J2 on chromosome 4.
AL589845.8:124556-124574
AGAACATTTTATCCTAAAACAAAAGGACAT124556ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Arvicola amphibius genome assembly, chromosome: 5.
LR862384.1:8599168-8599186
TTCTCCTGCTGCATGTCTTGCTTGTTTTCC8599168ACCTTCTTCCCAGCACCTTCTCTGCCCTGAAAATCCTGCCTAGCTATTC
Acomys russatus genome assembly, chromosome: 14.
LR877225.1:8863871-8863889
AAAACTTTTCACCCAAACACAAAAGAATAT8863871ACCTTCTTCCCAGCACCTTGTGGAACCTTCTCCAAAATTGACCATATAA
Acomys kempi genome assembly, chromosome: 8.
OU015362.1:72544425-72544443
TAAACTTTTCACCCAAACAAAAAAGAGTAT72544425ACCTTCTTCCCAGCACCTTGTGGAACCTTCTCCAAAATTGACCATATAA
Acomys dimidiatus genome assembly, chromosome: 8.
OU015381.1:73594635-73594653
AAAACTTTTCACCCAAACACAAAAGAATAT73594635ACCTTCTTCCCAGCACCTTGTGGAACCTTCTCCAAAACTGACCATGTAA
Mus musculus genome assembly, chromosome: 1.
OW971552.1:9161890-9161908
AGAACATTTTATCCTAAAACAAAAGAATAT9161890ACCTTCTTCCCAGCACCTTACAGGACCTTCTCCAAAACTGACCATAAAA
Mus musculus genome assembly, chromosome: 4.
OW971568.1:63050845-63050863
AGAACATTTTATCCTAAAACAAAAGGACAT63050845ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus genome assembly, chromosome: 1.
OW971573.1:8971159-8971177
AGAACATTTTATCCTAAAACAAAAGAATAT8971159ACCTTCTTCCCAGCACCTTACAGGACCTTCTCCAAAACTGACCATAAAA
Mus musculus genome assembly, chromosome: 4.
OW971577.1:62697084-62697102
AGAACATTTTATCCTAAAACAAAAGGACAT62697084ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus genome assembly, chromosome: 4.
OW971597.1:62891126-62891144
AGAACATTTTATCCTAAAACAAAAGGACAT62891126ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus domesticus genome assembly, chromosome: 1.
OW971615.1:9130008-9130026
AGAACATTTTATCCTAAAACAAAAGAATAT9130008ACCTTCTTCCCAGCACCTTACAGGACCTTCTCCAAAACTGACCATAAAA
Mus musculus genome assembly, chromosome: 4.
OW971639.1:62175368-62175386
AGAACATTTTATCCTAAAACAAAAGGACAT62175368ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus molossinus genome assembly, chromosome: 4.
OW971661.1:63784807-63784825
AGAACATTTTATCCTAAAACAAAAGGACAT63784807ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus spretus genome assembly, chromosome: 4.
OW971682.1:62768032-62768050
AGAACAATTTATCCTAAAACAAAAGGACAT62768032ACCTTCTTCCCAGCACCTTATAGTACCTTTTCCAAAATTGACCATATAA
Mus spretus genome assembly, chromosome: 4.
OW971682.1:107905058-107905076
AGAACATTTGATCCTAAAACAAAAGAATAT107905058ACCTTCTTCCCAGCACCTTATCATACCTTCTCCAAAATTGACCATATAT
Mus musculus genome assembly, chromosome: 4.
OW971712.1:61375611-61375629
AGAACATTTTATCCTAAAACAAAAGGACAT61375611ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus genome assembly, chromosome: 1.
OW971720.1:9284063-9284081
AGAACATTTTATCCTAAAACAAAAGAATAT9284063ACCTTCTTCCCAGCACCTTACAGGACCTTCTCCAAAACTGACCATAAAA
Mus musculus genome assembly, chromosome: 4.
OW971723.1:62645997-62646015
AGAACATTTTATCCTAAAACAAAAGGACAT62645997ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus genome assembly, chromosome: 4.
OW971745.1:63197466-63197484
AGAACATTTTATCCTAAAACAAAAGGACAT63197466ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus musculus genome assembly, chromosome: 4.
OW971765.1:61547649-61547667
AGAACATTTTATCCTAAAACAAAAGGACAT61547649ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus musculus genome assembly, chromosome: 15.
OW971777.1:21520335-21520353
AGAACATTTTATCCTAAAACAAAAGGATAT21520335ACCTTCTTCCCAGCACCTTACGGGACCTTCTCCAAAATTGACCATATAA
Mus musculus genome assembly, chromosome: 4.
OW971786.1:62090245-62090263
AGAACATTTTATCCTAAAACAAAAGGACAT62090245ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus genome assembly, chromosome: 1.
OW971804.1:10035708-10035726
AGAACATTTTATCCTAAAACAAAAGAATAT10035708ACCTTCTTCCCAGCACCTTACAGGACCTTCTCCAAAACTGACCATAAAA
Mus musculus genome assembly, chromosome: 4.
OW971808.1:63125919-63125937
AGAACATTTTATCCTAAAACAAAAGGACAT63125919ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mus musculus genome assembly, chromosome: 1.
OW971846.1:9100566-9100584
AGAACATTTTATCCTAAAACAAAAGAATAT9100566ACCTTCTTCCCAGCACCTTACAGGACCTTCTCCAAAACTGACCATAAAA
Mus musculus genome assembly, chromosome: 4.
OW971856.1:62986410-62986428
AGAACATTTTATCCTAAAACAAAAGGACAT62986410ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Apodemus sylvaticus genome assembly, chromosome: X.
OX359302.1:43615464-43615482
AGGACATGTCATCCTAAATTAAAAGAATAT43615464ACCTTCTTCCCAGCACCTTATGGAACCTTCTCCAAAACTGACCATATAA
Mus musculus genome assembly, chromosome: 4.
OX389798.1:71661829-71661847
AGAACATTTTATCCTAAAACAAAAGGACAT71661829ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Mobula hypostoma genome assembly, chromosome: 1.
OY992592.1:151713470-151713488
AAAAAAACTTACCTCCGACATCTCCTCTGT151713470ACCTTCTTCCCAGCACCTTAAACCTGTGCCCTCTTATGGCAACCATTTC
Mobula hypostoma genome assembly, chromosome: 14.
OY992605.1:7480196-7480214
AAAAAAACTTACCCCTGATATCTCCTCTGT7480196ACCTTCTTCCCAGCACCTTAAACCTGTGCCCTCTCGTGCTAGCCATGTC
Mobula hypostoma genome assembly, chromosome: 15.
OY992606.1:62343378-62343396
AAAAAAACTTACCCCTGACATCTCCTCTGT62343378ACCTTCTTCCCAGCACCTTAAAACTGTGGCCTCTCATGTTAGCCATTTC
Mus musculus clone BAC353o21, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.
AC003021.2:4472-4490
AGAACATTTTATCCTAAAACAAAAGGACAT4472ACCTTCTTCCCAGCACCTTATGGTACCTTTTCCAAAATTGACCATATAA
Rattus norvegicus clone CH230-5K1, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC094722.4:180911-180929
AGAATGCTTCACCCAAACACAAGAGAATTT180911ACCTTCTTCCCAGCACCTTTTGAAAAATTTCCCCCAAACTAACCACATA
Rattus norvegicus clone CH230-33L10, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC111707.5:153896-153914
ATAACATTTCTCCCTAAAACAAAAGAATAT153896ACCTTCTTCCCAGCACCTTCTGGTACCTTCTCCAAAACTGACCAAATAA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:103400913-103400931
CGGCGCAGACCCCACACCTTCTTCCCTTCC103400913ACCTTCTTCCCAGCACCTTGAGCCTCGGCTATATATCCCTGGCCTTCAT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:1420655-1420673
GAAGGTTGCAGCAACAGCTTGTACAATGCT1420655ACCTTCTTCCCAGCACCTTCTAGTCCTCTCTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:1543209-1543227
GAAGGTTGCAGCAACAGCTTGTACAATGCT1543209ACCTTCTTCCCAGCACCTTCTAGTCCTCTCTCTCTCTCTCCTTATATAC
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:1595362-1595380
GAAGGTTGCAGCAACAGCTTGTACAATGCT1595362ACCTTCTTCCCAGCACCTTCTAGTCCTCTCTCTCTCTCTCCTTATATAC
Secale cereale genome assembly, chromosome: 1R.
LR738709.1:162954519-162954537
TAGGAAATCCCGCGAACGTCCAATAGGGAG162954519ACCTTCTTCCCAGCACCTTATGTGCCAAGTTATTTTTAAAGAAATCCCG
Avena sativa genome assembly, chromosome: 7A.
OU342384.1:21170034-21170052
CGGCGCAGACCCCACACCTTCTTCCCTTCC21170034ACCTTCTTCCCAGCACCTTGAGCCTCGGCTATATATCCCTGGCCTTCAT
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:1566371-1566389
GAAGGTTGCAGCAACAGCTTGTACAATGCT1566371ACCTTCTTCCCAGCACCTTCTAGTCCTCTCTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:1588200-1588218
GAAGGTTGCAGCAACAGCTTGTACAATGCT1588200ACCTTCTTCCCAGCACCTTCTAGTCCTCTCTCTCTCTCTCCTTATATAC
Malus domestica genome assembly, chromosome: 12.
OU744553.1:1535085-1535103
GAAGGTTGCAGCAACAGCTTGTACAATGCT1535085ACCTTCTTCCCAGCACCTTCTAGTCCTCTCTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:1432293-1432311
GAAGGTTGCAGCAACAGCTTGTACAATGCT1432293ACCTTCTTCCCAGCACCTTCTAGTTCTCTCTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 12.
OU745002.1:1625704-1625722
GAAGGTTGCAGCAACAGCTTGTACAATGCT1625704ACCTTCTTCCCAGCACCTTCTAGTCCTCTCTCTCTCTCTCCTTATATAC
Avena sativa genome assembly, chromosome: 7.
OV702285.1:16975105-16975123
CGGCGCAGACCCCACACCTTCTTCCCTTCC16975105ACCTTCTTCCCAGCACCTTGAGCCTCGGCTATATATCCCTGGCCTTCAT
Onchidella celtica genome assembly, chromosome: 9.
OZ007575.1:4904760-4904778
TTTTTCTTCAATAAATTTGTTCTATTTCTC4904760ACCTTCTTCCCAGCACCTTGAATACAGGACAGTCCTGTAAAATTATGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGGTGCTGGGAAGAAGGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGGTGCTGGGAAGAAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.136 | 0.126 | search_plus_done; http://172.18.8.135:50400/match?q=AAGGTGCTGGGAAGAAGGT&k=0&no_gap=0&offset=0&limit=50
0.222 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTCTTCCCAGCACCTT&k=0&no_gap=0&offset=0&limit=28
0.253 | 0.032 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).