GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:33:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Micromys minutus genome assembly, chromosome: 16.
OZ004796.1:35928826-35928845
TTACTACTTTTGTGCTTTGGGGACATTATT35928826AAGTAAAATGATGACAGCAGCTCAAATACCAGTATTGCCATATTTGATTG
Gallus gallus breed Huxu chromosome 1.
CP100555.1:104247994-104248013
AAATGTCAAAAGTGTTGAAGCCTGAACCTC104247994AAGTAAAATGATGACAGCAGGGGCAATACAGAATGCGCCCATGTTGTGAG
Limanda limanda genome assembly, chromosome: 6.
OY754997.1:13671366-13671385
TGATATTAATCCCTTTTATTTATGATGTTC13671366AAGTAAAATGATGACAGCAGCTTATTACAGAGAGTGAAACTAAGACAAAG
Canna indica chromosome 6.
CP136895.1:68757009-68757028
TGATTCTTGAGCAAATCTTCACTTGAGGGA68757009AAGTAAAATGATGACAGCAGATGAAATAAAAACATAGAGCTTCACGCAAC
Caligus rogercresseyi isolate FCH chromosome 13.
CP045902.1:1202175-1202194
GAGGTAATTGAATATGTAAATTGTTTTAAA1202175AAGTAAAATGATGACAGCAGTCATATATAATTATAATAATATATTTAACC
Callimorpha dominula genome assembly, chromosome: Z.
OX456990.1:14613568-14613587
CAAACATACAAAACAAGCAAATTAATTATT14613568AAGTAAAATGATGACAGCAGCGGCGTCTGTTTGCTGAAGTGTTTTTGAAT
Eumerus sabulonum genome assembly, chromosome: 1.
OX645060.1:157112652-157112671
CAAACATTTTATTTCATATGCTTTCCGTGA157112652AAGTAAAATGATGACAGCAGCATATTCGACAGCGAAGCCCATAGATCACA
Erinaceus europaeus genome assembly, chromosome: X.
OX485817.1:54423379-54423398
GTGCACTCTATAGGCAGCCTATCACTAAGC54423379CTGCTGTCATCATTTTACTTTCAAGTGTATTGTCATAATCGTTCAGATTC
Pleuronectes platessa genome assembly, chromosome: 5.
OX374652.1:15922198-15922217
CTTTGTCTTAGTTTCACTCTCTGTAATAAG15922198CTGCTGTCATCATTTTACTTGAACATCATACATAAAAAGGGATTAATTTC
Notothenia rossii genome assembly, chromosome: 3.
OX449113.1:22521283-22521302
ATATTTAGGTGACAGTTCTTTATTATACTT22521283CTGCTGTCATCATTTTACTTTTTATTCAGTTTTAAATGCCATATTACCAT
Pinus pinaster xylem EST, clone PP042E07.
BX250888.1:504-523
TCTAAATTCTGCACAGTTCAGCTGTCCAAG504CTGCTGTCATCATTTTACTTGCANAGTTGTAAATTTTACACAGGTCATTT
Aquipluma nitroreducens DNA, complete genome.
AP018694.1:1900163-1900182
TAGATTTCAGGATCGTTTTGAGGTTGGTTT1900163CTGCTGTCATCATTTTACTTCATTTCTTCAGAAAGAAAATTACCGAAGCA
Ascidia mentula genome assembly, chromosome: 3.
OX387199.1:7268608-7268627
ATTTAGTAGATCGTTCAGCCAACATTTTAT7268608CTGCTGTCATCATTTTACTTTTGTTCACCAAAAATAATTAATGCCATGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGTAAAATGATGACAGCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGTAAAATGATGACAGCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=AAGTAAAATGATGACAGCAG&k=0&no_gap=0&offset=0&limit=50
0.166 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=CTGCTGTCATCATTTTACTT&k=0&no_gap=0&offset=0&limit=43
0.171 | 0.005 | cgi_end;

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