GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:26:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2DB35TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY937711.1:65-86
CAAAACTTAAAAAGGATTCTGTTCTCTCCA65AAGTCCAAACACATCTCCAAGGAAACATGAAAACTGCAAGAGGTCTAGTAGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_30908.
FX671564.1:52-73
CAAAACTTAAAAAGGATTCTGTTCTCTCCA52AAGTCCAAACACATCTCCAAGGAAACATGAAAACTGCAAGAGGTCTAGTAGT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:6796816-6796837
ACTACTAGACCTCTTGCAGTTTTCATGTTT6796816CCTTGGAGATGTGTTTGGACTTTGGAGAGAACAGAATCCTTTTTAAGTTTTG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:6796816-6796837
ACTACTAGACCTCTTGCAGTTTTCATGTTT6796816CCTTGGAGATGTGTTTGGACTTTGGAGAGAACAGAATCCTTTTTAAGTTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGTCCAAACACATCTCCAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGTCCAAACACATCTCCAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.187 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=AAGTCCAAACACATCTCCAAGG&k=0&no_gap=0&offset=0&limit=50
0.219 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTGGAGATGTGTTTGGACTT&k=0&no_gap=0&offset=0&limit=48
0.221 | 0.001 | cgi_end;

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