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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 13:42:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 852 from patent US 11174491.
MY701011.1:282-301
TCGTCCAAGCCGACACTTCTTCTTTCAAGC282AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GR__Ea25L07.r GR__Ea Gossypium raimondii cDNA clone GR__Ea25L07 3', mRNA sequence.
CO100368.1:245-264
TCGTCCAAGCCGACACTTCTTCTTTCAAGC245AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTCGCTTCT
EST1069910 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559270.1:334-353
TCGTCCAAGCCGACACTTCTTCTTTCAAGC334AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
EST1074757 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564117.1:336-355
TCGTCCAAGCCGACACTTCTTCTTTCAAGC336AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
EST1074820 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564180.1:4-23
AGC4AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
EST1078774 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT568134.1:329-348
TCGTCCAAGCCGACACTTCTTCTTTCAAGC329AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
EST1083217 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT572577.1:335-354
TCGTCCAAGCCGACACTTCTTCTTTCAAGC335AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GH_HYPT_01-01-38R_F12_InvR_03May04_086_F Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW227785.1:237-256
TCGTCCAAGCCGACACTTCTTCTTTCAAGC237AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GH_RMIRS_002_D07_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW476330.1:99-118
TCGTCCAAGCCGACACTTCTTCTTTCAAGC99AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GH_RMIRS_104_E12_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW494858.1:259-278
TCGTCCAAGCCGACACTTCTTCTTTCAAGC259AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GH_RMIRS_105_B09_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW494971.1:362-381
TCGTCCAAGCCGACACTTCTTCTTTCAAGC362AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GH_TMIRS_022_D04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW498064.1:58-77
TCGTCCAAGCCGACACTTCTTCTTTCAAGC58AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
GH_TMIRS_084_H05_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW504507.1:127-146
TCGTCCAAGCCGACACTTCGTCTTTCAAGC127AAGTCGTCCAGATGCTCACCGGATCTTCCGAGACGCCAAGCTTGCTTCTT
GH_TMIRS_136_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW509676.1:296-315
TCGTCCAAGCCGACACTTCTTCTTTCAAGC296AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
IC0AAA1AF12RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY266487.1:242-261
TCGTCCAAGCAGACACCTCTTCCTTCAAAC242AAGTCGTCCAGATGCTCACCGGATCCTCTGAAACCGCTAAACAGGCATCC
UFL_424_10 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES834091.1:124-143
TCGTCCAAGCCGACACTTCTTCTTTCAAGC124AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
UFL_151_50 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES848113.1:335-354
TCGTCCAAGCCGACACTTCTTCTTTCAAGC335AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
RR3EE54TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY917156.1:104-123
TTGTCCAAGCAGACACTTCCTCTTTCAAAC104AAGTCGTCCAGATGCTCACCGGGAGCTCCTCCCCGAGATCCCCAGACTCT
IC0AAA1AF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA1AF12, mRNA sequence.
FC901824.1:242-261
TCGTCCAAGCAGACACCTCTTCCTTCAAAC242AAGTCGTCCAGATGCTCACCGGATCCTCTGAAACCGCTAAACAGGCATCC
CCHT9229.b1_I03.ab1 CCHT Niger Seed Guizotia abyssinica cDNA clone CCHT9229, mRNA sequence.
GE576155.1:137-156
TCGTCGCAGACGAAGTATATTCCTTCAAGA137AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAACACGCCGCC
Zanthoxylum ailanthoides mRNA, clone: TTD01A01NGRM0012_B06, unspecified EST.
HX997120.1:73-92
TCGTCCAAGCCGACACTTCTTCCTTCAAAC73AAGTCGTCCAGATGCTCACCGGATCCTCTGAAACCGCTAAACAAGCATCT
LUSPS1AD_RP_105_E23_14AUG2008_092 LUSPS1AD Linum usitatissimum cDNA, mRNA sequence.
JG214243.1:341-360
TCGTCCAAGCCCACACTTCCACTTTCAAGC341AAGTCGTCCAGATGCTCACCGGCTCCCCCGACACCGCCAAGCACGCCTCC
LUSST4AD-T3-062_A11_15SEP2009_048 LUSST1AD Linum usitatissimum cDNA, mRNA sequence.
JG230532.1:384-403
TCGTCCAAGCCCACACTTCCACTTTCAAGC384AAGTCGTCCAGATGCTCACCGGCTCCCCCGACACCGCCAAGCACGCCTCC
mhczaa0_011047.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_011047.z1, mRNA sequence.
JG837978.1:467-486
TCGTCCAAGCCGACACTTCTTCTTTCAAGC467AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
mhczaa0_017092.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_017092.z1, mRNA sequence.
JG845677.1:358-377
TCGTCCAAGCCGACACTTCGTCTTTCAAGC358AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
TSA: Mesembryanthemum crystallinum mRNA, contig: Mcr013268.001.
FX916087.1:106-125
TCGTCCAAGCCGACACCACCTCCTTCAAGC106AAGTCGTCCAGATGCTCACCGGCGCCTCCGACAAGCCCGGCCCAGCCCAG
TSA: Raphanus sativus RS05647 mRNA sequence.
JT790194.1:52-71
TTGTCCAAGCAGACACTTCCTCTTTCAAAC52AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCCCCGGACTCG
TSA: Raphanus sativus RS05648 mRNA sequence.
JT790195.1:52-71
TTGTCCAAGCAGACACTTCCTCTTTCAAAC52AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCCCCGGACTCG
TSA: Chorispora bungeana T_43177 mRNA sequence.
KA080007.1:286-305
TCGTTCAAGCAGACACTTCCTCTTTCAAAC286AAGTCGTCCAGATGCTCACCGGAACCTCTTCCCCTCGATCCCCTGACTCG
UCDJRBES11539 Juglans regia HindIII library Juglans regia genomic clone JH033M16, genomic survey sequence.
HR194053.1:69-88
TCGTTCAAGCTGATACTTCCTCCTTCAAAC69AAGTCGTCCAGATGCTCACCGGATCCTCCGAAACCACCAAGCACGCCTCC
Lotus japonicus genomic DNA, chromosome 2, clone: LjB64M03, BM1183.
AP007875.2:69558-69577
CGATTAAGAACAAGGTTGATTACTGCAGGC69558AAGTCGTCCAGATGCTCACCGGATCCACCGAGACCGTCAAGCAAGCCTCC
Brassica rapa subsp. pekinensis clone KBrB035G14, complete sequence.
FP340612.1:81451-81470
TCTTCCAAACCGATGCTTCCTCCTTCAAGC81451AAGTCGTCCAGATGCTCACCGGATCCTCCAAGAAGCCTAACCCGACCCAC
Gossypium arboreum clone GM226J06-jme, complete sequence.
AC243102.1:115712-115731
TCGTCCAAGCCGACACTTCTTCTTTCAAGC115712AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:6859312-6859331
TCGTCCAAGCCGACACCTCCTCCTTCAAGC6859312AAGTCGTCCAGATGCTCACCGGATCCACCGAGACCGCCAAACAAGCCTCC
Gossypium raimondii isolate D5-4 chromosome D5_06.
CP032558.1:40939481-40939500
TCGTCCAAGCCGACACTTCGTCTTTCAAGC40939481AAGTCGTCCAGATGCTCACCGGATCTTCCGAGACCGCCAAGCTTGCTTCT
Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:47319932-47319951
TCGTCCAAGCCGACACTTCTTCTTTCAAGC47319932AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTCGCTTCT
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:80096472-80096491
TCGTCCAAGCCGACACTTCTTCTTTCAAGC80096472AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:131546896-131546915
TCGTCCAAGCCGACACTTCTTCTTTCAAGC131546896AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGTTCGCTTCT
Gossypium bickii isolate GPG1lz chromosome 6.
CP106714.1:23186376-23186395
TCGTCCAAGCCGACACTTCGTCTTTCAAGC23186376AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:188089238-188089257
TTCAGTCAAGGCGCTTCTTTTCTTTCAAGC188089238AAGTCGTCCAGATGCTCACCGCATCCTCCGAGACCGCCAAGCTCGCTTCT
Gossypium rotundifolium isolate GPK201 chromosome 4.
CP106725.1:148679826-148679845
CTGGCTGAAGGCAGCTCTTTTCTTTCAAGC148679826AAGTCGTCCAGATGCTCACCGGATCGTCCAAGACCGCCAAGCTCGCTTCT
Gossypium rotundifolium isolate GPK201 chromosome 6.
CP106727.1:84308763-84308782
TCGTCCAAGCCGACATTTCGTCTTTCAAGC84308763AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:178996253-178996272
TCGTCCAAGCCGACACTTCTTCTTTCAAGC178996253AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTCGCTTCT
Rhododendron vialii isolate Sample 1 chromosome 2b.
CP127053.1:19964488-19964507
TCGTCCAGGCCGACACCTTCTCCTTCAAAC19964488AAGTCGTCCAGATGCTCACCGGATCCTCCCACGCCAAACCCGACCCGCCC
Rhododendron vialii isolate Sample 1 chromosome 2a.
CP127066.1:21053442-21053461
TCGTCCAGGCCGACACCTTCTCCTTCAAAC21053442AAGTCGTCCAGATGCTCACCGGATCCTCCCACGCCAAACCCGACCCGCCC
XXX.
LR721787.1:328854-328873
TCGTCCAGGTCCAACCTTCCTCATTCAAGC328854AAGTCGTCCAGATGCTCACCTCTTCCCGAGAACAGCCGCCGGTCCGTGCC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:37760380-37760399
TTGTCCAAGCAGACACTTCCTCTTTCAAAC37760380AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCCCCGGACTCG
Ananas comosus genome assembly, chromosome: 11.
LR828291.1:11687326-11687345
TCATCCAGGCCGACACCGCGTCCTTCAAAC11687326AAGTCGTCCAGATGCTCACCGGCTCCGCCGCGGCCGCCGGGAAGCACGCC
Arabidopsis arenosa genome assembly, chromosome: 8.
LR999458.1:9938562-9938581
TTGTTCAAGCAGACACTTCTACTTTCAAAC9938562AAGTCGTCCAGATGCTCACCGGCTCCTCCACCGATAACACCACCGGAAAA
Thlaspi arvense genome assembly, chromosome: 3.
OU466859.2:52150486-52150505
TCGTTCAAGCAGACACTAACTCTTTCAAAC52150486AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCCCCAGACTCG
Thlaspi arvense genome assembly, chromosome: 4.
OU466860.2:6601090-6601109
ACGTCTACACCGATACTTCCTCCTTCAAAC6601090AAGTCGTCCAGATGCTCACCGGATGCCACAATAACCCGACTCACCAACCC
Ailanthus altissima genome assembly, chromosome: 8.
OX327690.1:24475017-24475036
TCGTCCAAGCCGACACTTCCTCCTTCAAAC24475017AAGTCGTCCAGATGCTCACCGGATCCTCCGAAACCGCCAAGCTCGCTTCC
Ailanthus altissima genome assembly, chromosome: 29.
OX327711.1:18187827-18187846
TCGTCCAAGCCGACACTTCTTCCTTTAAAC18187827AAGTCGTCCAGATGCTCACCGGATCCTCCGAAACCGCCAAGCTCGCTTCC
Hibiscus tridactylites genome assembly, chromosome: 16.
OY288280.1:83716726-83716745
TCGTCCAAGCCGATACTTCATCTTTCAAGC83716726AAGTCGTCCAGATGCTCACCGGATCTTCCGAGACGGCCAAGCTAGCTTCT
Hibiscus tridactylites genome assembly, chromosome: 18.
OY288282.1:79744602-79744621
TCGTCCAAGCCGACACTTCATCTTTCAAGC79744602AAGTCGTCCAGATGCTCACCGGATCTTCCGAGACGGCCAAGCTAGCTTCT
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:29490615-29490634
TCGTCCAAGCAGACACCTCTTCCTTCAAAC29490615AAGTCGTCCAGATGCTCACCGGATCCTCTGAAACCGCTAAACAAGCATCC
Nasturtium officinale genome assembly, chromosome: 6.
OY978504.1:4903399-4903418
TCATCCACACCGATGTTAGCTCCTTCAAGC4903399AAGTCGTCCAGATGCTCACCGGATACTCCAAGAAACCCAATTATCATAAC
Cardamine chenopodiifolia genome assembly, chromosome: 11.
OZ000469.1:14717921-14717940
TTGTTCAAGCAGACGCTTCCTCTTTCAAAC14717921AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCTCCAGACTCA
Cardamine chenopodiifolia genome assembly, chromosome: 19.
OZ000477.1:3986773-3986792
TTGTTCAAGCAGACACTTCCTCTTTCAAAC3986773AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCTCCAGACTCA
Cardamine chenopodiifolia genome assembly, chromosome: 27.
OZ000485.1:14884444-14884463
TTGTTCAAGCAGACACTTCCTCTTTCAAAC14884444AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCTCCAGACTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGTCGTCCAGATGCTCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGTCGTCCAGATGCTCACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.517 | 1.509 | search_plus_done; http://172.18.8.135:50400/match?q=AAGTCGTCCAGATGCTCACC&k=0&no_gap=0&offset=0&limit=50
1.574 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGAGCATCTGGACGACTT&k=0&no_gap=0&offset=0&limit=0
1.574 | 0.000 | cgi_end;

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