GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 17:03:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JBnY039J07F Brassica napus BAC library JBnY Brassica napus genomic clone JBnY039J07, genomic survey sequence.
DU102621.1:523-545
GTCATGACTTCTTTTCATGTGTGACTTTTT523AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH048J07, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241136.1:33958-33980
GTCATGACTTCTTTTCATGTGTGATTTTTT33958AAGTTTGGACCATTCCTAGAAAATATCATATTTGACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:34937034-34937056
GTCATGACTTCTTTTCATGTGTGATTTTTT34937034AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:3469086-3469108
CTTATGACTTCTTTTCATGTGTGATTTTTT3469086AAGTTTGGACCATTCCTAGAAAATATTATATTTTACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:2148172-2148194
GTCATGACTTCTTTTCATGTGTGATTTTTT2148172AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:43422569-43422591
GTCATGACTTCTTTTCATGTGTGATTTTTT43422569AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:21172936-21172958
GTCATGACTTCTTTTCATGTATGATTTTTT21172936AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:39525043-39525065
GTCATGACTTCTTTTCATGTGTGATTTTTT39525043AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:18144939-18144961
GTCATAACTTCTTTTCATGTGTGATTTTTT18144939AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:12012098-12012120
GTCATGACTTCTTTTCATGTGTGACTTTTT12012098AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome, scaffold: A01.
LR031571.1:26360085-26360107
GTCATGACTTCTTTTCATGTATGATTTTTT26360085AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome, scaffold: A04.
LR031576.1:562510-562532
GTCATGACTTCTTTTCATGTGTGATTTTTT562510AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:26880670-26880692
GTCATGACTTCTTTTCATGTATGATTTTTT26880670AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:583911-583933
GTCATGACTTCTTTTCATGTGTGATTTTTT583911AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
KBrH023M11F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH023M11, genomic survey sequence.
DX894414.1:420-442
TATAATAATGAACTTATGTAAAATATGATA420TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044L16, complete sequence.
AC189359.2:14266-14288
TATAATAATGAACTTATGTCAAATATGATA14266TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
AC189433.2:76024-76046
TATAATAATGAACTTATGTAAAATATGATA76024TTTTCTAGGAATGGTCCAAACTTAAAAAATCATACATGAAAATAATATATAAG
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:16673385-16673407
TATAATAATAAACTTATGTAAAATATGATA16673385TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:44196100-44196122
TATAATAATGAACTTATGTAAAATATGATA44196100TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:8314308-8314330
TATAATAATGAACTTATGTAAAATATGATA8314308TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTTATGAC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:35892748-35892770
TATAATAATGAACTTATGTAAAATATGATA35892748TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A01.
HG994355.1:29711073-29711095
TATAATAATGAACTTATGTAAAATATGATA29711073TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:16607339-16607361
TATAATAATAAACTTATGTAAAATATGATA16607339TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:31959310-31959332
TATAATAATGAACTTATGTAAAATATGATA31959310TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A05.
HG994359.1:32142438-32142460
TATAATAATGAACTTATGTAAAATATGATA32142438TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:38421268-38421290
TATAATAATGAACTTATGTAAAATATGATA38421268TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAATCATGAC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:60216543-60216565
TATAATAATGAACTTATGTAAAATATGATA60216543TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome, scaffold: A05.
LR031570.1:38229727-38229749
TATAATAATGAACTTATGTAAAATATGATA38229727TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome, scaffold: A02.
LR031573.1:30172282-30172304
TATAATAATGAACTTATGTAAAATATGATA30172282TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:31103857-31103879
TATAATAATGAACTTATGTAAAATATGATA31103857TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:34909550-34909572
TATAATAATGAACTTATGTAAAATATGATA34909550TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGTTTGGACCATTCCTAGAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGTTTGGACCATTCCTAGAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.148 | 0.140 | search_plus_done; http://172.18.8.135:50400/match?q=AAGTTTGGACCATTCCTAGAAAA&k=0&no_gap=0&offset=0&limit=50
0.223 | 0.075 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTCTAGGAATGGTCCAAACTT&k=0&no_gap=0&offset=0&limit=36
0.234 | 0.011 | cgi_end;

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