GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-26 21:45:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Vigna angularis mRNA, clone: VES03J18.
HX943446.1:381-400
ATCTTGTAAAAGCAGTAAAAGCAGCAAGCG381AATAGGCCATGCTGTCCTTGTTCCTGAACCTGTTGCACCAACAGGTCCAG
Vigna angularis mRNA, clone: VES04E24.
HX943705.1:273-292
ATCTTGTAAAAGCAGTAAAAGCAGCAAGCG273AATAGGCCATGCTGTCCTTGTTCCTGAACCTGTTGCACCAACAGGTCCAG
Vigna angularis mRNA, clone: VES11C05.
HX946286.1:530-549
ATCTTGTAAAAGCAGTAAAAGCAGCAAGCG530AATAGGCCATGCTGTCCTTGTTCCTGAACCTGTTGCACCAACAGGTCCAG
Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
AP015044.1:29456180-29456199
ATCTTGTAAAAGCAGTAAAAGCAGCAAGCG29456180AATAGGCCATGCTGTCCTTGTTCCTGAACCTGTTGCACCAACAGGTCCAG
Habrosyne pyritoides genome assembly, chromosome: 8.
OU015593.1:3956129-3956148
TTATAGATATATAGTATATTTGTTATCTGT3956129AATAGGCCATGCTGTCCTTGACATTAAGAATTTACCAGGAAATTAATAAA
Cohaesibacter marisflavi isolate 9db6b9be-bc22-45cd-a04b-979e77e3e096 genome assembly, chromosome: 2.
OY762534.1:4802070-4802089
AAATTATGCGCTCAAGAATGCCTTCACCAA4802070CAAGGACAGCATGGCCTATTTCCCCGGCGCGGTTCTTTCTCAGCTCCATA
Urbanus simplicius genome assembly, chromosome: 24.
OX453080.1:5077433-5077452
AATGAAGTTGCTTACTAGTCGGCAAATTTC5077433CAAGGACAGCATGGCCTATTACCGAAAAACAAAAACTCGTTGAAAAAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATAGGCCATGCTGTCCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATAGGCCATGCTGTCCTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.359 | 0.351 | search_plus_done; http://172.18.8.135:50400/match?q=AATAGGCCATGCTGTCCTTG&k=0&no_gap=0&offset=0&limit=50
0.394 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGGACAGCATGGCCTATT&k=0&no_gap=0&offset=0&limit=45
0.395 | 0.001 | cgi_end;

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