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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:55:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MUC4LH1001_A05_.b_033. Musa acuminata leaves HOT stress Musa acuminata subsp. burmannicoides cDNA 5', mRNA sequence.
DN237960.1:247-266
CACACCAGAGGCATGTACAGAATTCGAAAG247AATAGTGGCTAAGCGAGGCATGANCGCTACAATNNCCGCCTGGNATAA
Embrapa_Mbalbisiana_PKW_Leaf_019_F06_b Embrapa_Musa balbisiana_PKW_Leaf Musa balbisiana cDNA, mRNA sequence.
FL647810.1:368-387
CACACCAGAGGCATGTACAGAATTCGAAAG368AATAGTGGCTAAGCGAGGCATGACGCTACAATCCGCCTGATAAGAAATCG
Embrapa_Musa_ABB_Stressed_Cachaco_DE08TF Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group cDNA, mRNA sequence.
FL661008.1:470-489
CACACCAGAGGCATGTGCAGAATTCGAAAG470AATAGTGGCTAAGCGAGGCATGACGCTACAATCTGCCTGATAAGAAATCG
MA4LIMFES002B_MA4LIMFES002B_A11_.b_084 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES002B_MA4LIMFES002B_A11_.b_084 5', mRNA sequence.
JK533558.1:330-349
CACACCAGAGGCATGTACAGAATTCGAAAG330AATAGTGGCTAAGCGAGGCATGACGCTACAATCCGCCTGATAAGAAATCG
TSA: Musa acuminata AAA Group Unigene17561_B1 mRNA sequence.
JV363266.1:18-37
TGTACAGAATTCGAAAG18AATAGTGGCTAAGCGAGGCATGACTCTACAATCCGCCTGATAAGAAATCG
TSA: Musa acuminata AAA Group Unigene55065_NK1 mRNA sequence.
JV383913.1:18-37
TGTACAGAATTCGAAAG18AATAGTGGCTAAGCGAGGCATGACTCTACAATCCGCCTGATAAGAAATCG
Musa acuminata subsp. malaccensis isolate AA chromosome 2.
CP126371.1:25587194-25587213
CACACCAGAGGCATGTACAGAATTCGAAAG25587194AATAGTGGCTAAGCGAGGCATGACGCTACAATCCGCCTGATAAGAAATCG
Musa acuminata subsp. malaccensis isolate AA chromosome 13.
CP126382.1:25692293-25692312
CACACCAGAGGCATGTACAGAATTCGAAAG25692293AATAGTGGCTAAGCGAGGCATGACGCTACAATCCGCCTGATAAGAAATCG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A02.
HG996467.1:24200818-24200837
CACACCAGAGGCATGTACAGAATTCGAAAG24200818AATAGTGGCTAAGCGAGGCATGACGCTACAATCCGCCTGATAAGAAATCG
Musa schizocarpa genome assembly, chromosome: S02.
LS990916.1:26199909-26199928
CACACCAGAGGCATGTACAGAATTCGAAAG26199909AATAGTGGCTAAGCGAGGCATGACGCTACAATCCGCCTGATAAGAAATCG
EST1236814 ESTSYN-L Musa acuminata AAA Group cDNA clone pESTSYNL-9P21 5', mRNA sequence.
ES436608.1:420-439
CGATTTCTTATCAGGCGGATTGTAGCGTCA420TGCCTCGCTTAGCCACTATTCTTTCGAATTCTGTACATGCCTCTGGTGTG
Sepiola atlantica genome assembly, chromosome: 24.
OY744538.1:40054897-40054916
GTGTTTATGTCTTTATTTCTACGAGTATTT40054897TGCCTCGCTTAGCCACTATTCCATAAACTAACTTTCTATTTTGTCTAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATAGTGGCTAAGCGAGGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATAGTGGCTAAGCGAGGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.380 | 0.371 | search_plus_done; http://172.18.8.135:50400/match?q=AATAGTGGCTAAGCGAGGCA&k=0&no_gap=0&offset=0&limit=50
0.457 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=TGCCTCGCTTAGCCACTATT&k=0&no_gap=0&offset=0&limit=40
0.458 | 0.001 | cgi_end;

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