GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:37:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence.
AC129219.3:25808-25825
TACAAAATGTCTAGAAGAGGCTTCCTGTGA25808AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus BAC clone RP24-511O23 from chromosome 14, complete sequence.
AC154805.2:117356-117373
TACAAAATGTCTAGAAGAGGCTTCCTGTGA117356AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971556.1:50942807-50942824
TACAAAATGTCTAGAAGAGGCTTCCTGTGA50942807AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971586.1:51378769-51378786
TACAAAATGTCTAGAAGAGGCTTCCTGTGA51378769AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971607.1:50738149-50738166
TACAAAATGTCTAGAAGAGGCTTCCTGTGA50738149AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus domesticus genome assembly, chromosome: 14.
OW971619.1:50616754-50616771
TACAAAATGTCTAGAAGAGGCTTCCTGTGA50616754AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971650.1:51012773-51012790
TACAAAATGTCTAGAAGAGGCTTCCTGTGA51012773AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus molossinus genome assembly, chromosome: 14.
OW971666.1:67730840-67730857
TACAAAATGTCTAGAAGAGGCTTCCTGTGA67730840AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971704.1:50897805-50897822
TACAAAATGTCTAGAAGAGGCTTCCTGTGA50897805AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971733.1:51212214-51212231
TACAAAATGTCTAGAAGAGGCTTCCTGTGA51212214AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971755.1:51390828-51390845
TACAAAATGTCTAGAAGAGGCTTCCTGTGA51390828AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus musculus genome assembly, chromosome: 14.
OW971776.1:50625363-50625380
TACAAAATGTCTAGAAGAGGCTTCCTGTGA50625363AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971796.1:51175170-51175187
TACAAAATGTCTAGAAGAGGCTTCCTGTGA51175170AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971815.1:56545784-56545801
TACAAAATGTCTAGAAGAGGCTTCCTGTGA56545784AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus castaneus genome assembly, chromosome: 14.
OW971830.1:52667008-52667025
TACAAAATGTCCAGAAGAGGCTTCCTGTGA52667008AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OW971849.1:52747996-52748013
TACAAAATGTCTAGAAGAGGCTTCCTGTGA52747996AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OX389808.1:58916948-58916965
TACAAAATGTCTAGAAGAGGCTTCCTGTGA58916948AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OX390153.1:68575425-68575442
TACAAAATGTCTAGAAGAGGCTTCCTGTGA68575425AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
Mus musculus genome assembly, chromosome: 14.
OX439028.1:57625663-57625680
TACAAAATGTCTAGAAGAGGCTTCCTGTGA57625663AATCAAGGTCGTTCCTCCAGCCTGGCTTGGTTTGCTTCCCATGTGTTG
BONOZ14TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOZ14, genomic survey sequence.
BZ484346.1:528-545
GGTTGCAGTTGTAAACGGGTTCAAGAGATA528AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTGATACA
Brassica napus var. napus clone Bna.AP1_chrC06_30791920_25629-3, genomic survey sequence.
KM387880.1:79-96
GGTTGCAGTTGTAAACGGGTTCAAGAGATA79AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTCATACA
Brassica napus var. napus clone Bna.AP1_chrC06_30791920_Campino, genomic survey sequence.
KM387881.1:80-97
GGTTGCAGTTGTAAACGGGTTCAAGAGATA80AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTGATACA
Brassica napus subsp. rapifera clone Bna.AP1_chrC06_30791920_MagresPajberg, genomic survey sequence.
KM387882.1:80-97
GGTTGCAGTTGTAAACGGGTTCAAGAGATA80AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTGATACA
Brassica napus var. napus clone Bna.AP1_chrC06_30791920_Silona, genomic survey sequence.
KM387883.1:79-96
GGTTGCAGTTGTAAACGGGTTCAAGAGATA79AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTCATACA
Brassica oleracea var. alboglabra clone BoB028L01, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
EU642504.1:73063-73080
GGTTGCAGTTGTAAACGGGTTCAAGAGATA73063AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTGATACA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:49504049-49504066
GGTTGCAGTTGTAAACGGGTTCAAGAGATA49504049AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTCATACA
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:1745112-1745129
GACCAAGCTTTTGGGAGATAGTAGAGGCCG1745112AATCAAGGTCGTTCCTCCCCTCAGCCAATGTTGCAGAAGTAAGTTTCT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:39991885-39991902
GGTTGCAGTTGTAAACGGGTTCAAGAGATA39991885AATCAAGGTCGTTCCTCCTCATTGCCATTGGATCTTCTTCTTGATACA
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:64593866-64593883
GAAGAGATGATGAGGTCAGGTTGTTGATTA64593866AATCAAGGTCGTTCCTCCGGCATAGCCGTGAAATCAAGCTTCGTGTTA
Brassica oleracea var. viridis mRNA, clone: KALE-137C21, 3' end sequence.
DK567567.1:439-456
TGTATGAAGAAGAAGATCCAATGGCAATGA439GGAGGAACGACCTTGATTTATCTCTTGAACCCGTTTACAACTGCAACC
Brassica oleracea var. botrytis mRNA for MADS-box protein AP1-c.
AJ505846.1:832-849
TGTATCAAGAAGAAGATCCAATGGCAATGA832GGAGGAACGACCTTGATTTATCTCTTGAACCCGTTTACAACTGCAACC
Cenchrus purpureus cultivar elephant grass chromosome B3.
CP053463.1:13896864-13896881
CCATCCAAGATGGAAGGGTTCTGATCGAAA13896864GGAGGAACGACCTTGATTTGTTCTCACTTGCGAGAGGCAGTTTTCGTT
Cenchrus purpureus cultivar elephant grass chromosome B3.
CP053463.1:14245810-14245827
CCATCCAAGATGGAAGGGTTCTGATCGAAA14245810GGAGGAACGACCTTGATTTGTTCTCACTTGCGAGAGGGTTGGATGTTC
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:8397662-8397679
AGAAGTTGGCTTCTGCGATGTTAGCTGTAG8397662GGAGGAACGACCTTGATTCAGCCTCTACCATCTCCCAAAACCCAGGTC
Brassica napus genome assembly, chromosome: C06.
HG994370.1:41981524-41981541
TGTATCAAGAAGAAGATCCAATGGCAATGA41981524GGAGGAACGACCTTGATTTATCTCTTGAACCCGTTTACAACTGCAACC
Brassica oleracea homeotic protein boi1AP1 (Boi1AP1) mRNA, complete cds.
U67451.1:838-855
TGTATCAAGAAGAAGATCCAATGGCAATGA838GGAGGAACGACCTTGATTTATCTCTTGAACCCGTTTACAACTGCAACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATCAAGGTCGTTCCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCAAGGTCGTTCCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.279 | 0.270 | search_plus_done; http://172.18.8.135:50400/match?q=AATCAAGGTCGTTCCTCC&k=0&no_gap=0&offset=0&limit=50
0.358 | 0.079 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGGAACGACCTTGATT&k=0&no_gap=0&offset=0&limit=21
0.363 | 0.005 | cgi_end;

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