GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:47:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15492.
FX692944.1:2754-2773
CAGTAGAAGATCAATCGCACGATCAAAGAT2754AATCGAAAGAGCTACGGGTTACGTAGACACGCACGCACGCACAGGAGAAC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2705271-2705290
CAGTAGAAGATCAATCGCACGATCAAAGAT2705271AATCGAAAGAGCTACGGGTTACGTAGACACGCACGCACGCACAGGAGAAC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 92 unordered pieces.
FJ789644.1:913570-913589
CAGTAGAAGATCAATCGCACGATCAAAGAT913570AATCGAAAGAGCTACGGGTTACGTAGACACGCACGCACGCACAGGAGAAC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:44813547-44813566
CAGTAGAAGATCAATCGCACGATCAAAGAT44813547AATCGAAAGAGCTACGGGTTACGTAGACACGCACGCACGCACAGGAGAAC
Trigastrotheca stricta voucher 14CS8874 (KUN) plastid, complete genome.
MK397905.1:36613-36632
GTGGGCTAATCCAACTAATCTTGCTTGTAC36613AATCGAAAGAGCTACGGGTTTATCTCTCCATCGAATCAAATTGGCTAAAG
BR003137 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-016H04 5', mRNA sequence.
EX018493.1:104-123
TTCTCCTGTGCGTGCGTGCGTGTCTACGCT104AACCCGTAGCTCTTTCGATTATCTTTGATCGTGCGATTGATCTTCTACTG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 71 unordered pieces.
FJ789647.1:59452-59471
GTTCTCCTGTGCGTGCGTGCGTGTCTACGT59452AACCCGTAGCTCTTTCGATTATCTTTGATCGTGCGATTGATCTTCTACTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
AC189221.2:48526-48545
GTTCTCCTGTGCGTGCGTGCGTGTCTACGT48526AACCCGTAGCTCTTTCGATTATCTTTGATCGTGCGATTGATCTTCTACTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATCGAAAGAGCTACGGGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCGAAAGAGCTACGGGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=AATCGAAAGAGCTACGGGTT&k=0&no_gap=0&offset=0&limit=50
0.171 | 0.073 | search_minus_done; http://172.18.8.135:50400/match?q=AACCCGTAGCTCTTTCGATT&k=0&no_gap=0&offset=0&limit=45
0.173 | 0.002 | cgi_end;

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