GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:44:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

PG07003F05 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07003F05 5', mRNA sequence.
CN845656.1:119-138
GCAGGTGGCCGCATGTCCGCTCCATCACCG119AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07006G01 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07006G01 5', mRNA sequence.
CN846004.1:115-134
GCAGGTGGCCGCATGTCCGCTCCATCACCG115AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07005D05 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07005D05 5', mRNA sequence.
CN846053.1:117-136
GCAGGTGGCCGCATGTCCGCTCCATCACCG117AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07010D03 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07010D03 5', mRNA sequence.
CN846224.1:115-134
GCAGGTGGCCGCATGTCCGCTCCATCACCG115AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07016G11 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07016G11 5', mRNA sequence.
CN846397.1:119-138
GCAGGTGGCCGCATGTCCGCTCCATCACCG119AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07015F01 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07015F01 5', mRNA sequence.
CN846454.1:123-142
GCAGGTGGCCGCATGTCCGCTCCATCACCG123AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07019C12 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07019C12 5', mRNA sequence.
CN846708.1:11-30
TCCATCAACG11AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07003G03 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07003G03 5', mRNA sequence.
CN848085.1:117-136
GCAGGTGGCCGCATGTCCGCTCCATCACCG117AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07028G11 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07028G11 5', mRNA sequence.
CN848388.1:113-132
GCAGGTGGCCGCATGTCCGCTCCATCACCG113AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07030H10 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07030H10 5', mRNA sequence.
CN848510.1:119-138
GCAGGTGGCCGCATGTCCGCTCCATCACCG119AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
gonad_EST03060 Embryonic gonad cDNA Library Gallus gallus cDNA 5', mRNA sequence.
CV855584.1:128-147
GCAGGTGGCCGCATGTCCGCTCCGCCACCG128AATGGCAAGAAGACTGCAGCAGAGGCCCTTCGACGAGCTCCTCACGAGAA
KYERRC001_08-C10-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS076697.1:122-141
GCAGGTGGCCGCATGTCCGCTCCATCACCG122AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_10-F08-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS076903.1:121-140
GCAGGTGGCCGCATGTCCGCTCCATCACCG121AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_15-H04-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS077367.1:118-137
GCAGGTGGCCGCATGTCCGCTCCATCACCG118AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_26-C03-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS078331.1:125-144
GCAGGTGGCCGCATGTCCGCTCCATCACCG125AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_38-C09-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS079470.1:121-140
GCAGGTGGCCGCATGTCCGCTCCATCACCG121AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_41-E11-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS079778.1:121-140
GCAGGTGGCCGCATGTCCGCTCCATCACCG121AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
TSA: Panax ginseng strain Shi Zhu Shen contig05779.Pagi mRNA sequence.
JI153892.1:11-30
TCCATCACCG11AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22759562-22759581
TTCTCATGAGGAGCGCGTTTAAGTGCTTCT22759562GCTGCAGTCTTCTTGCCATTCGATGGAGCAGTAGACATACGCCCACCTGC
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:35073337-35073356
TTCTCATGAGGAGCACGTTTAAGTGCTTCT35073337GCTGCAGTCTTCTTGCCATTCGATGGAGCAGTAGACATACGCCCACCTGC
Hedera helix genome assembly, chromosome: 2.
OX359265.1:46705191-46705210
TTCTCGTGAGGAGCTCGTCGAAGGGCCTCG46705191GCTGCAGTCTTCTTGCCATTAGGTGGTGGAGCGGACATGCGGCCACCTGC
Hedera helix genome assembly, chromosome: 3.
OX359266.1:46373809-46373828
TTTTCGTGAGGAGCTCGTCGTAGGGCCTCG46373809GCTGCAGTCTTCTTGCCATTAGGTGGTGGAGCGGACATGCGACCACCTTC
Hedera helix genome assembly, chromosome: 20.
OX359283.1:27881792-27881811
TTCTCGTGTGGAGCTCTGCGGAGAGCTTCA27881792GCTGCAGTCTTCTTGCCATTAGGCGGAGCAGACATACGCCCACCTGCACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATGGCAAGAAGACTGCAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGGCAAGAAGACTGCAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.562 | 1.553 | search_plus_done; http://172.18.8.135:50400/match?q=AATGGCAAGAAGACTGCAGC&k=0&no_gap=0&offset=0&limit=50
1.588 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGCAGTCTTCTTGCCATT&k=0&no_gap=0&offset=0&limit=32
1.592 | 0.003 | cgi_end;

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