GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 23:59:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Lactuca serriola Serrassy_T_P2_64881 mRNA sequence.
JO020545.1:928-952
CTGGCGTCCTATGGGGTCATCGACATAGGA928ACAAGCTCCAACTTTACGTTTGATATACAGAATACCAGAATTAAACGGATCCTTC
Lactuca saligna genome assembly, chromosome: 2.
OX465078.1:149414389-149414413
CTGGCGTCCTATGGGATCATCCACGTAGGA149414389ACAAGCTCCAACTTTACGTTTGATATACAGGATACCCGAATTAAATGGATCCTTC
Arctium minus genome assembly, chromosome: 4.
OX941083.1:140465489-140465513
CTGGCGCCCTATAGGATCATCCACATATGA140465489ACAAGCTCCAACTTTACGTTTGATATAGAGGATACCAGAATTAAATGGATCGTTC
QGB19C20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB19C20, mRNA sequence.
BQ852855.1:37-61
GAAGGATCCGTTTAATTCCGGTATTCTGTA37TATCAAACGTAAAGTTGGAGCTTGTTCCTATGTGGATGACCCCATAGGACGCCAG
TSA: Lactuca sativa Letassy_X1_41 mRNA sequence.
JI573875.1:4746-4770
GAAGGATCCGTTTAATTCCGGTATTCTGTA4746TATCAAACGTAAAGTTGGAGCTTGTTCCTATGTGGATGACCCCATAGGACGCCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACAAGCTCCAACTTTACGTTTGATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAAGCTCCAACTTTACGTTTGATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=ACAAGCTCCAACTTTACGTTTGATA&k=0&no_gap=0&offset=0&limit=50
0.142 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=TATCAAACGTAAAGTTGGAGCTTGT&k=0&no_gap=0&offset=0&limit=47
0.144 | 0.002 | cgi_end;

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