GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 13:42:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST1071099 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT560459.1:309-328
TTCACGTTCACAACGTGATCATCAAAGGGA309ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
UFL_433_89 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES822932.1:320-339
TTCACGTTCACAACGTGATCATCAAAGGGA320ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
mhczaa0_028290.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_028290.z1, mRNA sequence.
JG837665.1:445-464
TTCACGTTCACAACGTGATCATCAAAGGGA445ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
mhczaa0_010358.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_010358.z1, mRNA sequence.
JG844774.1:450-469
TTCACGTTCACAACGTGATCATCAAAGGGA450ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Gossypioides kirkii chromosome KI_01.
CP032244.1:5180050-5180069
TTCACGTTCACAACGTGATCATCAAAGGCA5180050ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:6534487-6534506
TTCACGTTCACAACGTGATCATCACAGGGA6534487ACACGAAGACCAAAGGCTACATAATCGAATCCCAGGCGTCAGAGGCTTTG
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:8404007-8404026
TTCACGTTCACAACGTGATCATCAAAGGGA8404007ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:8708130-8708149
TTCACGTTCACAACGTGATCATCAAAGGGA8708130ACACGAAGACCAAAGGCTACATAATCGAAACCCAGGCGTCAGAGGCTTTG
Hibiscus tridactylites genome assembly, chromosome: 4.
OY288268.1:3939406-3939425
TCCACGTCCACGATGTGATCGTCAAAGGGA3939406ACACGAAGACCAAAGGCTACATAATCGGAGCCGAGGCATCGGAGGATTTG
Cantharis rufa genome assembly, chromosome: 2.
OX376304.1:13759639-13759658
CAAGCTTACACATGAGTATAGAGCTAGCTT13759639ACACGAAGACCAAAGGCTACATACAAACGAAGCTAAATTATTGGCTATTC
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:53754372-53754391
CAAAGTCTCTGACGCCTGGGTTTCGATTAT53754372GTAGCCTTTGGTCTTCGTGTTCCCTGTGATGATCACGTTGTGAACGTGAA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:117251859-117251878
CAAAGCCTCTGACGCCTGGGTTTCGATTAT117251859GTAGCCTTTGGTCTTCGTGTTCCCTTTGATGATCACGTTGTGAACGTGAA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:188872011-188872030
CAAAGCCTCTGACGCCTGGGTTTCGATTAT188872011GTAGCCTTTGGTCTTCGTGTTCCCTTTGATGATCACGTTGTGAACGTGAA
Hibiscus tridactylites genome assembly, chromosome: 9.
OY288273.1:97148841-97148860
CAAATCCTCCGATGCCTCGGCTCCGATTAT97148841GTAGCCTTTGGTCTTCGTGTTCCCTTTGACGATCACGTCGTGGACGTGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACACGAAGACCAAAGGCTAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACACGAAGACCAAAGGCTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.344 | 0.335 | search_plus_done; http://172.18.8.135:50400/match?q=ACACGAAGACCAAAGGCTAC&k=0&no_gap=0&offset=0&limit=50
0.363 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGCCTTTGGTCTTCGTGT&k=0&no_gap=0&offset=0&limit=40
0.366 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).