GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2705537-2705556

TGCGCCTCTCTTTGATGGACAGCTGGCGTT2705537ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 92 unordered pieces.
FJ789644.1:913836-913855

TGCGCCTCTCTTTGATGGACAGCTGGCGTT913836ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:60993237-60993256

TGCGCCTCTCTTTGATGGACAGCTGGCGTT60993237ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG

Brassica napus genome assembly, chromosome: A09.
HG994363.1:44813813-44813832

TGCGCCTCTCTTTGATGGACAGCTGGCGTT44813813ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG

Brassica napus genome assembly, chromosome: C08.
HG994372.1:31138583-31138602

TGCGCCTCTCTTTGATGGACAGCTGGCGTT31138583ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG

Brassica rapa genome, scaffold: A09.
LR031568.1:49123339-49123358

TGCGCCTCTCTTTGATGGACAGCTGGCGTT49123339ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG

Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:40423048-40423067

TGCGCCTCTCTTTGATGGACAGCTGGCGTT40423048ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:59595417-59595436

TGCGCCTCTCTTTGATGGACAGCTGGCGTT59595417ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG

Arabis alpina genome assembly, chromosome: 5.
LT669792.1:24738160-24738179

ACCTCTCTTTGATCGACAGCTGTCATCATC24738160ACACGTCATTCCTCGTGAATCGCTACCGTCGCTTTTCTTTTTTCTTGATT

Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:31285855-31285874

TGCGCCTCTCTCTGATAGACAGCTGGCGTT31285855ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTTTCTTGAT

Draba incana genome assembly, chromosome: 16.
OY755217.1:29183561-29183580

TGCACCTCTCTCCTTTCGACAGCTGTCATC29183561ACACGTCATTCCTCGTGAATCAACACCGTCGCTTCTCTTTTTGTTGATTG

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 71 unordered pieces.
FJ789647.1:59186-59205

CAATCAAGGAAAAGAGAAACGACGGTGGTG59186ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
AC189221.2:48260-48279

CAATCAAGGAAAAGAGAAACGACGGTGGTG48260ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:10626398-10626417

CAATCAAGAAAAAGAGAAACGACGGTGGTG10626398ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA

Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:12747095-12747114

ATCAAGAAAAAAAGAGAAACGACGGTGGTG12747095ATTCACGAGGAATGACGTGTAACGCCAGCTGTCTATCAGAGAGAGGCGCA

Draba incana genome assembly, chromosome: 15.
OY755216.1:4634478-4634497

CAATCAACAAAAAGAGAAGCGACGGTGTTG4634478ATTCACGAGGAATGACGTGTGATGACAGCTGTCGAAAGGAGTGAGGTGCA

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Debug Info:

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=ACACGTCATTCCTCGTGAAT&k=0&no_gap=0&offset=0&limit=50
0.157 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCACGAGGAATGACGTGT&k=0&no_gap=0&offset=0&limit=39
0.161 | 0.003 | cgi_end;

Summary:

Results:

Data Export:

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