GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:29:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium pratense cDNA clone:RCE08729.
BB909850.1:471-490
CGCCGGAACACGGTGCTGTAAAACAGGAGG471ACACGTGGCAACAAGATCAGCACGGCAACCAACTACCGGACATTCGCCTT
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:31984528-31984547
CGCCGGAACACGGTGCTGTAAAACAGGTGG31984528ACACGTGGCAACAAGATCAGCACGGCAACCAACCACCGGACACTCACCCT
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:24290337-24290356
CGCCGGAACACGGTGCTGTAAAACAGGAGG24290337ACACGTGGCAACAAGATCAGCACGGCAACCGACAACCGGACACTCACCTT
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:23085440-23085459
CGCCGGAACACGGTGCTGCAAAACAGGAGG23085440ACACGTGGCAACAAGATCAGCACGACAACCAACCACCGGACACTCACCTT
Trifolium repens mRNA, clone: WCC16n18_088, unspecified EST.
FY459851.1:482-501
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTG482CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG
Trifolium repens mRNA, clone: WCC21o07_015, unspecified EST.
FY461621.1:466-485
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTG466CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG
Trifolium repens mRNA, clone: WCC22c18_089, unspecified EST.
FY461718.1:481-500
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTG481CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG
Trifolium repens mRNA, clone: WCC24e10_051, unspecified EST.
FY462468.1:482-501
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTG482CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG
Trifolium repens mRNA, clone: WCC25n16_056, unspecified EST.
FY463047.1:476-495
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTG476CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG
Trifolium repens mRNA, clone: WCC29j16_054, unspecified EST.
FY464361.1:475-494
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTA475CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG
Trifolium repens mRNA, clone: WCC40g05_075, unspecified EST.
FY468237.1:472-491
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTG472CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:30153064-30153083
AGGGTGAGTGTCCGGTGGTTGGTTGCCGTG30153064CTGATCTTGTTGCCACGTGTCCACCTGTTTTACAGCACCGTGTTCCGGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACACGTGGCAACAAGATCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACACGTGGCAACAAGATCAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=ACACGTGGCAACAAGATCAG&k=0&no_gap=0&offset=0&limit=50
0.609 | 0.504 | search_minus_done; http://172.18.8.135:50400/match?q=CTGATCTTGTTGCCACGTGT&k=0&no_gap=0&offset=0&limit=46
0.614 | 0.005 | cgi_end;

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