GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:51:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 5, clone: LjB14G21, BM1886.
AP010568.1:29591-29610
TATACATAGGCCATTGTTACGTATTGTTAT29591ACATGATATTTTACCCTCCCTCTATTTTTATATGATGCAGTTTTATTTAA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:31106994-31107013
TATACATAGGCCATTGTTACGTATTGTTAT31106994ACATGATATTTTACCCTCCCTCTATTTTTATATGATGCAGTTTTATTTAA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:182799342-182799361
GTCTCTACTCTTGTCTCTGTATCTGTAGGC182799342ACATGATATTTTACCCTCCCTGAGTTTTAACCTATTTTTCGGCATTAAAT
Cardamine chenopodiifolia genome assembly, chromosome: 21.
OZ000479.1:9411530-9411549
AAAGTTCAGAAAAATTAGGACGGGAACAAA9411530ACATGATATTTTACCCTCCCCAAAATATCTAGACCTATATAATGACAGTT
Sthenelais limicola genome assembly, chromosome: 6.
OW804099.1:14021074-14021093
TCAATGACCTCAATTACCTTTTTTTTAATT14021074GGGAGGGTAAAATATCATGTCAACTATGTATAGATTTTAAACCGCATGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACATGATATTTTACCCTCCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACATGATATTTTACCCTCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=ACATGATATTTTACCCTCCC&k=0&no_gap=0&offset=0&limit=50
0.118 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=GGGAGGGTAAAATATCATGT&k=0&no_gap=0&offset=0&limit=46
0.118 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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