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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:30:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypioides kirkii chromosome KI_10.
CP032252.1:29337416-29337435
ACCTCTTTTATTAGTTCTGGGTCAGTAGTC29337416ACCACCTGAGCTTGAACACCGTCCCAAGAAAGATAGATCTTCCCTAATCA
Gossypium raimondii isolate D5-4 chromosome D5_10.
CP032562.1:34093507-34093526
ACCTCTTTTATTAGTTCTGGGTCAGTAGTC34093507ACCACCTGAGCTTGAACACCGTCCCAAGAAAGATAGTTCTTTCCTAATCA
Gossypium turneri isolate D10-2 chromosome D10_10.
CP032580.1:35428176-35428195
ACCTCTTTTATTAGTTCTGGGTCAGTAGTC35428176ACCACCTGAGCTTGAACACCGTCCCAAGAAAGATAGTTCTTTCCTAATCA
Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:31466386-31466405
ACCTCTTTTATTAGTTCTGGGTCAGTAGTC31466386ACCACCTGAGCTTGAACACCGTCCCAAGAAAGATAGTTCTTCCCTAATCA
Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:198489065-198489084
CCTCCATCCTCCTGGTTCAGCCCTTGGTGG198489065GGTGTTCAAGCTCAGGTGGTTTCGAGTGAACCTCTGTCTGTGACAGTTCT
Gobius niger genome assembly, chromosome: 9.
OX637603.1:1892532-1892551
GACATCCATCACCATCTCCTTCGTCTTACT1892532GGTGTTCAAGCTCAGGTGGTTGCGCTCACACCGGGTTCTCCAGGTCGTTC
GR__Ea09I04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea09I04 5', mRNA sequence.
CO089838.1:107-126
TTATACGGAAAGAACTATCTTTCTTGGGAC107GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
GR__Eb0027P13.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0027P13 3', mRNA sequence.
CO101546.1:121-140
TTATACGGAAAGAACTATCTTTCTTGGGAC121GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
GR__Eb0036B10.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0036B10 3', mRNA sequence.
CO105755.1:308-327
TTATACGGAAAGAACTATCTTTCTTGGGAC308GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
GR__Eb45O15.r GR__Eb Gossypium raimondii cDNA clone GR__Eb45O15 3', mRNA sequence.
CO132843.1:250-269
TTATACGGAAAGAACTATCTTTCTTGGGAC250GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
G.hir-15-20 DAA bolls drought stressed 843 15-20 DAA bolls from drought stressed plants Gossypium hirsutum cDNA, mRNA sequence.
DN801688.1:305-324
TTATACGGGAAGAACTATCTTTCTTGGGAC305GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
G.hir-8-10 DAA bolls drought stressed98 8-10 DAA cotton bolls from drought stressed plants Gossypium hirsutum cDNA, mRNA sequence.
DN803222.1:21-40
GCACGAGGCTTTCTTGGGAC21GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
CM110H11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR462725.1:159-178
TTATACGGAAAGAACTATCTTTCTTGGGAC159GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
UFL_023_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES836694.1:78-97
TGATTAGGAAAGAACTATCTTTCTTGGGAC78GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
mhczaa0_021330.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_021330.z1, mRNA sequence.
JG857489.1:536-555
TGATTAGGGAAGAACTATCTTTCTTGGGAC536GGTGTTCAAGCTCAGGTGGTGACTACTGAA
A03-66A03 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794490.1:252-271
TGATTAGGAAAGAACTATCTTTCTTGGGAC252GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxa0_0022_C02.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ370064.1:397-416
TTATACGGAAAGAACTATCTTTCTTGGGAC397GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxb0_0030_G08.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ373400.1:324-343
TTATACGGAAAGAACTATCTTTCTTGGGAC324GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAGTAAAAGAGGT
ndcxd0_0005_D03.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ377169.1:324-343
TTATACGGAGAGAACTATCTTTCTTGGGAC324GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxd0_0006_G08.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ377288.1:332-351
TGATTAGGAAAGAACTATCTTTCTTGGGAC332GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxd0_0032_F11.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379334.1:324-343
TTATACGGAAAGAACTATCTTTCTTGGGAC324GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxe0_0010_F07.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ380394.1:324-343
TTATACGGAAAGAACTATCTTTCTTGGGAC324GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxe0_0012_E06.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ380551.1:324-343
TTATACGGAAAGAACTATCTTTCTTGGGAC324GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxf0_0015_D06.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ383742.1:324-343
TTATACGGAAAGAACTATCTTTCTTGGGAC324GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
ndcxf0_0024_E06.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ384544.1:324-343
TTATACGGAAAGAACTATCTTTCTTGGGAC324GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:90610724-90610743
TGATTAGGGAAGAACTATCTTTCTTGGGAC90610724GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:57392377-57392396
TGATTAGGGAAGAACTATCTTTCTTGGGAC57392377GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT
Gossypium rotundifolium isolate GPK201 chromosome 10.
CP106731.1:69343653-69343672
TGATTAGGGAAGGACTATCTTTCTTGGGAC69343653GGTGTTCAAGCTCAGGTGGTGACTACTGACCCAGAACTAATAAAAGAGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCACCTGAGCTTGAACACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCACCTGAGCTTGAACACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=ACCACCTGAGCTTGAACACC&k=0&no_gap=0&offset=0&limit=50
1.678 | 1.580 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGTTCAAGCTCAGGTGGT&k=0&no_gap=0&offset=0&limit=46
1.694 | 0.016 | cgi_end;

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