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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:26:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3 from patent US 7723110.
GX266207.1:1494-1519
AAGAGATTGACTTGATGCAGTGCTCTGTTT1494TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Sequence 3 from patent US 8053237.
GY509922.1:1494-1519
AAGAGATTGACTTGATGCAGTGCTCTGTTT1494TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Sequence 9430 from patent US 10766935.
MV652825.1:1101-1126
AAGAGATTGACTTGATGCAGTGCTCTGTTT1101TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Sequence 9430 from patent US 11566053.
OS276304.1:1101-1126
AAGAGATTGACTTGATGCAGTGCTCTGTTT1101TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT982476.1:286-311
AAGAGATTGACTTGATGCAGTGCTTTGTTT286TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus gunnii EST from cold-acclimated leaves (from plantlets in controlled conditions and trees in field trials).
CU397127.1:151-176
AAGAGATTGACTTGATGCAGTGCTCTGTTT151TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTTAAGTGAATAATTCTATAG
Eucalyptus gunnii EST from cold-acclimated leaves (from plantlets in controlled conditions and trees in field trials).
CU398070.1:643-668
AAGAGATTGACTTGATGCAGTGCTCTGTTT643TGTCTCGTGGTAGTGATGTCAGTGGTT
Eucalyptus gunnii EST from cold-acclimated leaves (from plantlets in controlled conditions and trees in field trials).
CU400617.1:523-548
AAGAGATTGACTTGATGCAGTGCTCTGTTT523TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTTAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000177D09, 3'-EST.
FY825859.1:123-148
AAGAGATTGACTTGATGCAGTGCTCTGTTT123TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000177E09, 3'-EST.
FY825872.1:92-117
AAGAGATTGACTTGATGCAGTGCTCTGTTT92TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000224F07, 3'-EST.
FY828915.1:325-350
AAGAGATTGACTTGATGCAGTGCTCTGTTT325TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000301E02, 3'-EST.
FY834373.1:65-90
GAAGAGATTGACTTGATGCAGTGCTCTGTT65TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCACTGACATCACTACCACGAGACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCACTGACATCACTACCACGAGACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=ACCACTGACATCACTACCACGAGACA&k=0&no_gap=0&offset=0&limit=50
0.657 | 0.561 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCTCGTGGTAGTGATGTCAGTGGT&k=0&no_gap=0&offset=0&limit=50
0.665 | 0.008 | cgi_end;

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