GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:02:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Avena insularis genome assembly, chromosome: 7C.
OU342344.1:450587653-450587672
ATCATGGAATAATTATGAATGATTAGAATA450587653ACCTATTCCTTATGTTATGATATATGTGGAGAGAGCCCCATAATAAGATG
SDSS2_11 SDSS2 Camellia sinensis var. sinensis cDNA clone P11 5', mRNA sequence.
GH710840.1:124-143
TCTCGTGATTGGCGGCCATTGAGCAGAGCT124TCATAACATAAGGAATAGGTATATATATGTATATGTGTATGTGTAGTGCG
Tea008_2005-10-27_1/Tea008_E05_020_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK478812.1:78-97
TCTCGTGATTGGCGGCCATTGAGCAGAGCT78TCATAACATAAGGAATAGGTATATATATGTATATGTGTATGTGTAGTGCG
Avena insularis genome assembly, chromosome: 1C.
OU342338.1:363462833-363462852
CATCTTATTATGGAACTCTCTCTACACATG363462833TCATAACATAAGGAATAGGTTATCCTAATTATGATTAATTACAACATGCT
Avena sativa genome assembly, chromosome: 1C.
OU342385.1:410114715-410114734
CATCTTATTATGGAACTCTCTCTACACATG410114715TCATAACATAAGGAATAGGTTATCCTAATTATGATTAATTACAACATTCT
Avena eriantha genome assembly, chromosome: 3C.
OU342742.1:466344203-466344222
CATCTTATTATGGAGCTCTCTCCACACATA466344203TCATAACATAAGGAATAGGTTATCCTAATCATTCCTAATTTTTCCATGCT
Avena sativa genome assembly, chromosome: 8.
OV702286.1:449035070-449035089
CATCTTATTATGGAACTCTCTCTACACATG449035070TCATAACATAAGGAATAGGTTATCCTAATTATGATTAATTACAACATTCT
Hecatera dysodea genome assembly, chromosome: 5.
HG995291.1:9949353-9949372
TATATACGGAGACTGAATGGAGTTTTGTTA9949353TCATAACATAAGGAATAGGTAGCTTTTAGATTTATTTACGTGTCTGACTT
Acleris holmiana genome assembly, chromosome: 8.
OX438770.1:5260235-5260254
CTTGAGAATTTCCACTGAAGAGCAATAAGC5260235TCATAACATAAGGAATAGGTATACAGTTTGCACTGTCAACTTTGAGGATT
Helleia helle genome assembly, chromosome: 6.
OY971419.1:15834854-15834873
AAAACTTCTGTTAACTCAAGGAGAACTTAA15834854TCATAACATAAGGAATAGGTCTATATTGTCTGAAATTAATAACTACAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCTATTCCTTATGTTATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCTATTCCTTATGTTATGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=ACCTATTCCTTATGTTATGA&k=0&no_gap=0&offset=0&limit=50
0.273 | 0.180 | search_minus_done; http://172.18.8.135:50400/match?q=TCATAACATAAGGAATAGGT&k=0&no_gap=0&offset=0&limit=49
0.278 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).