GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:48:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38701629-38701648
AAAGAGGAAATTAGCGCCAATTGAGGTAAG38701629ACCTCCCGCCAATAGAAAACCGCCACGTCGACATAATAATAGAAATGGTC
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38531005-38531024
AAAGAGGAAATTAGTGCGACGTGAGTTAAG38531005ACCTCCCGCCAATAGAAAACCGCCACGTCGACATCATAATAGAAATGGTC
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25671166-25671185
AAAGAGGAAATTAGTGCCGATTGAGGTAAG25671166ACCTCCCGCCAATAGAAAACCGCCACGTTGACATCATAATAGAAATGGTC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2435723-2435742
GACCATTTCTATTATTATGTCGACGTGGCG2435723GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2394065-2394084
GACCATTTCTATTATTATGTCGACGTGGCG2394065GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2481916-2481935
GACCATTTCTATTATTATGTCGACGTGGCG2481916GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2588362-2588381
GACCATTTCTATTATTATGTCGACGTGGCG2588362GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2413691-2413710
GACCATTTCTATTATTATGTCGACGTGGCG2413691GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2543649-2543668
GACCATTTCTATTATTATGTCGACGTGGCG2543649GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2536220-2536239
GACCATTTCTATTATTATGTCGACGTGGCG2536220GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2593039-2593058
GACCATTTCTATTATTATGTCGACGTGGCG2593039GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2627536-2627555
GACCATTTCTATTATTATGTCGACGTGGCG2627536GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2604470-2604489
GACCATTTCTATTATTATGTCGACGTGGCG2604470GTTTTCTATTGGCGGGAGGTCTTACCTCAATTGGCGCTAATTTCCTCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCTCCCGCCAATAGAAAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCTCCCGCCAATAGAAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=ACCTCCCGCCAATAGAAAAC&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTTCTATTGGCGGGAGGT&k=0&no_gap=0&offset=0&limit=47
0.124 | 0.006 | cgi_end;

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