GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 21:00:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:316828121-316828140
ACTCACCAAGTTCCCAAAACCCTCCCAATA316828121ACGATATGACACACGCCTTGGGTTTTTAGAAAACTTTAAGTTTTAAAAGG
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:316854288-316854307
ACTCACCAAGTTCCCAAAACCCTCCCAATA316854288ACGATATGACACACGCCTTGGGTTTTTAGAAAACTTTAAGTTTTGAAAGG
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:220937676-220937695
ACTCACCAAGTTCCCAAAACCCTCCCAATA220937676ACGATATGACACACGCCTTGGGATTTTAGAAAACTTTAAGTTTTTAAAGG
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:220963859-220963878
ACTCACCAAGTTCCCAAAACCCTCCCAATA220963859ACGATATGACACACGCCTTGGGTTTTTAGAAAACTTTAAGTTTTGAAAGG
Avena longiglumis genome assembly, chromosome: 1A.
OU342747.1:224393157-224393176
ACTCACCAAGTTCCCAAAACCCTCCCAATA224393157ACGATATGACACACGCCTTGGGTTTTTAGAAAACTTTAAGTTTTGAAAGG
Avena longiglumis genome assembly, chromosome: 1A.
OU342747.1:224419349-224419368
ACTCACCAAGTTCCCAAAACCCTCCCAATA224419349ACGATATGACACACGCCTTGGGTTTTTAGAAAACTTTAAGTTTTGAAAGG
Sphaeramia orbicularis genome assembly, chromosome: 19.
LR597476.1:13993462-13993481
TAGTCCAAAATGTTGGTGTTCATCTGTATA13993462CAAGGCGTGTGTCATATCGTTCTCATACTCGTCAAATCAATAAATGAGGA
atr01-10ms1-b07 Atr01 Amborella trichopoda cDNA clone atr01-10ms1-b07 5', mRNA sequence.
CD482303.2:307-326
CGTGCGGCGCTCAGGCTTTTGGGGCCAGGT307CAAGGCGTGTGTCATATCGTTCTTCTGTACCTGTAACAATTCTGAGTCTC
Lymantria dispar genome assembly, chromosome: 11.
OY755136.1:15268805-15268824
ACTGAAGTAGCATTTAATATTTTAATCTCG15268805CAAGGCGTGTGTCATATCGTCTCTGTAGTCTGTAGCTCTCGTGTACGATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGATATGACACACGCCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGATATGACACACGCCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=ACGATATGACACACGCCTTG&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGGCGTGTGTCATATCGT&k=0&no_gap=0&offset=0&limit=44
0.141 | 0.002 | cgi_end;

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