GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 11:30:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Platichthys flesus genome assembly, chromosome: 1.
OX438716.1:25610848-25610867
TTCGCAGACCTTTTAGGCTTGTGGACAATC25610848ACGGAAAACACAGACAAGACATTGCAGTTGTTTGTCTTTTAGTGGAGCAC
Gymnoscopelus microlampas genome assembly, chromosome: 14.
OY732716.1:27528203-27528222
TACACAGGAGCCGAGGCTACACAAGTCTAC27528203ACGGAAAACACAGACAAGACTAAAGAGTGCATTTAGCAGATCGAGACACC
Lotus japonicus genomic DNA, chromosome 1, clone: LjB16L15, BM1010.
AP007739.2:89165-89184
TCAGAATGATCCGAAATTAATGCTTGAAAA89165ACGGAAAACACAGACAAGACCTGGAATGTCGAATATAATAATAATAATAA
Lotus japonicus genomic DNA, chromosome 1, clone: LjT43P05, TM0113.
AP004942.1:7260-7279
TCAGAATGATCCGAAATTAATGCTTGAAAA7260ACGGAAAACACAGACAAGACCTGGAATGTCGAATATAATAATAATAATAA
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:109782955-109782974
TCAGAATGATCCGAAATTAATGCTTGAAAA109782955ACGGAAAACACAGACAAGACCTGGAATGTCGAATATAATAATAATAATAA
Cheilosia impressa genome assembly, chromosome: 4.
OX411883.1:46818423-46818442
GTCTAATAATATTGTTCGTTTTTTATAGAA46818423ACGGAAAACACAGACAAGACGATTCTCTTGGACCACCATCAACTTTTCTT
Vespertilio murinus genome assembly, chromosome: 5.
OZ004708.1:135652917-135652936
TACAGTGTGTCTTTATATTTATTAAACGAT135652917GTCTTGTCTGTGTTTTCCGTGTCAGGACCTATAGATCTACTCCTGTGAGG
Gymnoscopelus braueri genome assembly, chromosome: 18.
OY725525.1:32523066-32523085
TTATATTATGATGAATGCTATATTAAACGA32523066GTCTTGTCTGTGTTTTCCGTAGGTGAAGCCCAAAGTGATTGAGCCGTTGG
Warburgia ugandensis isolate CL-2023a chromosome 3.
CP141128.1:91793654-91793673
CAAAACAAAAGAAGCCAATTTAAGTATAGA91793654GTCTTGTCTGTGTTTTCCGTGCCAAGTCCTTTTTAGATTTTTTTTAAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGGAAAACACAGACAAGAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGGAAAACACAGACAAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=ACGGAAAACACAGACAAGAC&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTTGTCTGTGTTTTCCGT&k=0&no_gap=0&offset=0&limit=44
0.133 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).