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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 02:15:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

cDNA-AFLP 031 Pimpinella brachycarpa cDNA AFLP fragment Spuriopimpinella brachycarpa cDNA clone 200 5', mRNA sequence.
CD052247.1:132-150
AAATACTGATCTGACATAGTTTCGACAGCA132ACGGAATTGGTACGCAGTCA
cDNA-AFLP 032 Pimpinella brachycarpa cDNA AFLP fragment Spuriopimpinella brachycarpa cDNA clone 214-1 5', mRNA sequence.
CD052248.1:310-328
GATTTCTTGGATGACGTGATGATCCATTGG310ACGGAATTGGTACGCAGTCA
cDNA-AFLP 035 Pimpinella brachycarpa cDNA AFLP fragment Spuriopimpinella brachycarpa cDNA clone 230 5', mRNA sequence.
CD052251.1:212-230
TTTGCGTTGAGCAACGAAATTTATCATGTT212ACGGAATTGGTACGCAGTCA
LZYTDF9 tomato leave library Solanum lycopersicum cDNA, mRNA sequence.
EX487884.1:215-233
CAAGTCCCCAAGGCTTGGAGAAATAAACCA215ACGGAATTGGTACGCAGTC
EST1IIIa cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 1IIIa, mRNA sequence.
EX956365.1:98-116
GCGCTTTCTGGGTTTGGGGGTTGTTCCTTC98ACGGAATTGGTACGCAGTC
EST4IIIa cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 4IIIa, mRNA sequence.
EX956417.1:330-348
GGACTAGTTGGGAAAAGTATTTCTGATTTT330ACGGAATTGGTACGCAGTC
EST5IIId cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 5IIId, mRNA sequence.
EX956432.1:332-350
AGTTCATAAAAGTAAGAGTAACACTGGTCG332ACGGAATTGGTACGCAGTC
EST7XVIIIa cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 7XVIIIa, mRNA sequence.
EX956446.1:238-256
TCTGTGATAATTGTATATATCAATGCTTTG238ACGGAATTGGTACGCAGTC
EST9XVIIIb cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 9XVIIIb, mRNA sequence.
EX956449.1:202-220
CTTTCGATTGGCTCACCATCGGACATACAG202ACGGAATTGGTACGCAGTC
EST9XVIIIc cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 9XVIIIc, mRNA sequence.
EX956450.1:238-256
TCTGTGATAATTGTATATATCAATGCTTTG238ACGGAATTGGTACGCAGTC
EST10XIXa cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 10XIXa, mRNA sequence.
FE192420.1:222-240
AACCTCGAAAGACAGGTCTGGTCTTCGTAG222ACGGAATTGGTACGCAGTC
22a Endurance Horses PBMC Library Equus caballus cDNA, mRNA sequence.
FG341839.1:196-214
TGAGTCTGCAACTTGAACATCAATTTGGTA196ACGGAATTGGTACGCAGTC
23a Endurance Horses PBMC Library Equus caballus cDNA, mRNA sequence.
FG341840.1:323-341
AAGGGAGGGTTGGCTTCTATCTCTGAGTTG323ACGGAATTGGTACGCAGTC
24a Endurance Horses PBMC Library Equus caballus cDNA, mRNA sequence.
FG341841.1:246-264
TGCTGAGAGACAGCCTCATGAGAGCAGCTG246ACGGAATTGGTACGCAGTC
25a Endurance Horses PBMC Library Equus caballus cDNA, mRNA sequence.
FG341842.1:208-226
CTCATCTGTGGCAGCCTCTGCCAACCTTAC208ACGGAATTGGTACGCAGTCA
Quercus robur EST, clone 2L6-5tot.
FR877841.1:93-111
CAAGAGCAGCACTCTTACAAAGATCCAATT93ACGGAATTGGTACGCAGTCA
TDF0292a Oncidium hybrid cultivar Milliongolds flower development cDNA-AFLP Oncidium hybrid cultivar cDNA clone TDF0292, mRNA sequence.
JG014411.1:169-187
GCAGCCAATGCAGACGGGTTCAATGCAGCA169ACGGAATTGGTACGCAGTCATGATGAGTCCTGAGTAAGCGGTACGAATT
TDF0571a Oncidium hybrid cultivar Milliongolds flower development cDNA-AFLP Oncidium hybrid cultivar cDNA clone TDF0571, mRNA sequence.
JG014480.1:118-136
GATAGGAATGAACTATGTTCCTTGCCACTT118ACGGAATTGGTACGCAGTCATGATGAGTCCTGAGTAAGCGGTAGGAATT
TDF0825a Oncidium hybrid cultivar Milliongolds flower development cDNA-AFLP Oncidium hybrid cultivar cDNA clone TDF0825, mRNA sequence.
JG014534.1:130-148
TGCGACGCCGAGGAAAAGCCAAGCAAGGCC130ACGGAATTGGTACGCAGTCTACAAGATGATGAGTCCTAAGTAATCGACC
EST013 cDNA-AFLP of Tea Looper (Ectropic oblique) eclipsed tea plant leaves Camellia sinensis cDNA clone 17A, mRNA sequence.
JK714345.1:211-229
ACTGCATTGATCTCGGTAGCTACGCCCCCC211ACGGAATTGGTACGCAGTCA
EST080 cDNA-AFLP of Tea Looper (Ectropic oblique) eclipsed tea plant leaves Camellia sinensis cDNA clone 22N3, mRNA sequence.
JK714399.1:277-295
TTAGGCATTGTATATGAACAAATATATCAC277ACGGAATTGGTACGCAGTC
EST0132 cDNA-AFLP of Tea Looper (Ectropic oblique) eclipsed tea plant leaves Camellia sinensis cDNA clone 28P1, mRNA sequence.
JK714431.1:335-353
AACTGCAAATGAGAACGATGGAGTAGAAGG335ACGGAATTGGTACGCAGTC
EST046 cDNA-AFLP of tea plant leaves sprayed with chemical pesticides Camellia sinensis cDNA clone 17G2, mRNA sequence.
JK993163.1:390-408
CTTCTGCCATGCCAAGTGTTCTTTCAAGAT390ACGGAATTGGTACGCAGTCA
Barcode_AGTCAA_contig_1722 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS791502.1:245-263
CTTCGCATCCGGATCGGAATCATACAATTC245ACGGAATTGGTACGCAGTCTCCGCATAACGTTTCGACGTCGGCTCGAAA
Barcode_AGTCAA_contig_4184 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS793542.1:142-160
GTAACCGTTTGGAGCTTCACTTTCAACGAT142ACGGAATTGGTACGCAGTCGACTGCGTACCAATTCATCAAAAATTTCTA
Barcode_AGTCAA_contig_5300 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS794477.1:177-195
GAATTAGGAAAGCTGCTTCTCACAGATATT177ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_7063 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS795952.1:24-42
TCCTGAGTAATTTCCATAGAAAA24ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_10486 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS798753.1:244-262
TTCTGTCCATGCAGGAATAATATACAGATA244ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_13253 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS801013.1:266-284
TTTTATTGATGGGTGGTACAACTGGCCGTG266ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_16088 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS803307.1:122-140
AAGCAAAGCCTGAAGCTGTTTTGCTTTCTC122ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_18695 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS805401.1:436-454
CGCGCTCAGCTCCTGAGTAATGGCGTTCAG436ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_23333 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS809578.1:296-314
TGTGTTATTGAATTGTTTAGGAGCATTTCC296ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_48504 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS830452.1:399-417
CCGAACATGGCTACGCCAGCACCGCCTAAG399ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_67108 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS846261.1:184-202
ATAGCCTGTTGCAACAGCCGGTGAACGTCG184ACGGAATTGGTACGCAGTCGACTGCGTACCAATTCTGGAAGATTATGAA
Barcode_AGTCAA_contig_68165 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS847136.1:68-86
TGTGGTTCCCTGGATATTGTCGTAGAGCAC68ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_69301 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS848075.1:50-68
CGGACATTCTCGTACTCGATCCTCCTCGCG50ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_79124 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS856155.1:326-344
TTACCAACACAGTCTTCCAAGGCTTTACAT326ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_88751 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS865202.1:316-334
CACAAAAACATAAGACAGACAAGCGTATTT316ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_95990 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS871659.1:73-91
AGCAGATGAAGAGTTCAGATGGAAACATTT73ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_99731 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS874753.1:164-182
ATGAACGCTATGACGGAAAAGGATATCCAA164ACGGAATTGGTACGCAGTCGACTGCGTACCAATTCAGGCTCCATGATTG
Barcode_AGTCAA_contig_116261 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS890734.1:98-116
TTTATCACTGCTTGATGAAACCAAAAAATT98ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_118795 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS893171.1:347-365
TTTCCCGACGTTGGATTTCGGCAGTTCATC347ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_125295 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS898512.1:471-489
TCCGAAAGAAAATTCCATTTTATTGCGGTA471ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_132131 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS904243.1:588-606
TCACGGCAGTAGTCGTACTGAAGCTTTGAA588ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_150623 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS920349.1:191-209
ACTTCTTTACCCTTGTCAGGAACAGCATGA191ACGGAATTGGTACGCAGTC
Barcode_AGTCAA_contig_152782 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS922082.1:616-634
GAGAAATATCAAGGATCAGACCCATACGGG616ACGGAATTGGTACGCAGTC
Bacillus atticus clone att_ah6 genomic sequence.
KF256353.1:941-959
ATTATTTTTTTTATCCCCCAAATTCCTTCT941ACGGAATTGGTACGCAGTC
Sequence 7 from Patent WO2006038794.
CS423445.1:1-19
1GACTGCGTACCAATTCCGT
JP 2004321055-A/43: Novel genetic markers related the gene of non-brittle rachis 1 (btr1) and 2 (btr2) and use of the genetic markers.
DD081270.1:1-19
1GACTGCGTACCAATTCCGT
WO 2005071076-A/37: Genetic markers that link to genes associated with Fusarium head blight resistance, and use thereof.
DD215441.1:1-19
1GACTGCGTACCAATTCCGT
Artificial oligonucleotide LS10 AFLP selective primer for Homo sapiens genome analysis.
AM946351.1:1-19
1GACTGCGTACCAATTCCGT
LZYTDF20 tomato leave library Solanum lycopersicum cDNA, mRNA sequence.
EX487894.1:1-19
1GACTGCGTACCAATTCCGTTGGTTTATTTCTCCAAGCCTTGGGGACTTG
EST5IIIa cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 5IIIa, mRNA sequence.
EX956431.1:1-19
1GACTGCGTACCAATTCCGTAAAATCAGAAATACTTTTCCCAACTAGTCC
EST5XVIIIa cDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Crassostrea gigas cDNA clone 5XVIIIa, mRNA sequence.
EX956435.1:1-19
1GACTGCGTACCAATTCCGTGTGAATCAGCGAGGACCACCTCGTAAGGCT
Vigna radiata var. sublobata DNA, clone:Mac114, AFLP fragment linked to PMR1 (powdery mildew resistance QTL 1).
AB085910.1:1-19
1GACTGCGTACCAATTCCGTGAAACCAGACAAGACCTACTGATGATAGGG
Barcode_AGTCAA_contig_212 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS790212.1:1-19
1GACTGCGTACCAATTCCGTCTTATATCCGGATTACTCAGGAGACTGCGT
Barcode_AGTCAA_contig_846 AFLP mother child gut associated microbiota uncultured bacterium genomic, genomic survey sequence.
KS790745.1:232-250
TTTCCTCAGTCCAGGATCCTGAGTACGGCG232GACTGCGTACCAATTCCGTCGGAATCCGGGAGGACCATCTCCCAAGGCT
Obolodiplosis robiniae microsatellite W107 sequence.
KP260530.1:14-32
CGATACTGCCCTT14GACTGCGTACCAATTCCGTCACATTGTTGTGTGGCGATGTGCTCTGTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGGAATTGGTACGCAGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGGAATTGGTACGCAGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.904 | 2.896 | search_plus_done; http://172.18.8.135:50400/match?q=ACGGAATTGGTACGCAGTC&k=0&no_gap=0&offset=0&limit=50
3.237 | 0.333 | search_minus_done; http://172.18.8.135:50400/match?q=GACTGCGTACCAATTCCGT&k=0&no_gap=0&offset=0&limit=3
3.244 | 0.008 | cgi_end;

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