GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 19:36:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene3047_XinShao mRNA sequence.
JR598361.1:183-202
TGTCGCTTAACTCCAACGATATGTTCTGTC183ACTAAACCTCCATACGAGCACAAAGAAGCTCACTATAACCTTGGTAATAG
TSA: Pyrus x bretschneideri Unigene78265_XinShao mRNA sequence.
JR663206.1:183-202
TGTCGCTTAACTCCAACGATATGTTCTGTC183ACTAAACCTCCATACGAGCACAAAGAAGCTCACTATAACCTTGGTAATAG
TSA: Pyrus x bretschneideri Unigene78267_XinShao mRNA sequence.
JR663208.1:183-202
TGTCGCTTAACTCCAACGATATGTTCTGTC183ACTAAACCTCCATACGAGCACAAAGAAGCTCACTATAACCTTGGTAATAG
TSA: Pyrus x bretschneideri Unigene78268_XinShao mRNA sequence.
JR663209.1:183-202
TGTCGCTTAACTCCAACGATATGTTCTGTC183ACTAAACCTCCATACGAGCACAAAGAAGCTCACTATAACCTTGGTAATAG
TSA: Pyrus x bretschneideri Unigene78269_XinShao mRNA sequence.
JR663210.1:145-164
TGTCGCTTAACTCCAACGATATGTTCTGTC145ACTAAACCTCCATACGAGCACAAAGAAGCTCACTATAACCTTGGTAATAG
TSA: Pyrus x bretschneideri Unigene78270_XinShao mRNA sequence.
JR663211.1:145-164
TGTCGCTTAACTCCAACGATATGTTCTGTC145ACTAAACCTCCATACGAGCACAAAGAAGCTCACTATAACCTTGGTAATAG
TSA: Pyrus pyrifolia mRNA, contig: contig_12629revcomp.
FX430799.1:368-387
CTATTACCAAGGTTATAGTGAGCTTCTTTG368TGCTCGTATGGAGGTTTAGTGACGGAACATATCGTTAGGAAAAAGTTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTAAACCTCCATACGAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTAAACCTCCATACGAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.174 | 0.165 | search_plus_done; http://172.18.8.135:50400/match?q=ACTAAACCTCCATACGAGCA&k=0&no_gap=0&offset=0&limit=50
0.196 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTCGTATGGAGGTTTAGT&k=0&no_gap=0&offset=0&limit=44
0.197 | 0.001 | cgi_end;

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