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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 16:12:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH022_05279m, 5' end sequence.
AB450705.1:88-110
TCTCTCTCTCTCTAGACTCTCAAATGGGAA88ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG
Mdfw2003m20.y1 Mdfw Malus domestica cDNA clone Mdfw2003m20 5', mRNA sequence.
CN445562.1:158-180
ACTTTCTCTCTCTAGACTCTCAAATGGGAA158ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
Mdfw2025e21.y1 Mdfw Malus domestica cDNA clone Mdfw2025e21 5', mRNA sequence.
CN494452.1:82-104
ACTTTCTCTCTCTAGACTCTCAAATGGGAA82ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
001116AAOA001105HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA001105, mRNA sequence.
CN868500.1:74-96
TCTCTCTCTCTCTCGACTTTCAAATGGGAA74ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
001202AAOA005946HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA005946, mRNA sequence.
CN869239.1:61-83
TCTCTCTCTCTCTCGACTTTCAAATGGGAA61ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
001202AAOA006077HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA006077, mRNA sequence.
CN869294.1:21-43
CTCGACTTTCAAATGGNGAA21ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
001203AAOA004381HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA004381, mRNA sequence.
CN869541.1:51-73
TCTCTGTGTCTCTCGACTTTCAAATGGGAA51ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
001203AAOA004610HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA004610, mRNA sequence.
CN869554.1:4-26
GAA4ACTACATCTCATGCACTTTGGCCACGCTCGTGATCAAGAGCTCCACGTCAGCG
001204AAOA007650HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA007650, mRNA sequence.
CN870484.1:72-94
TCTCTCTCTCTCTCGACTTTCAAATGGGAA72ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
001204AAOA007747HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA007747, mRNA sequence.
CN870533.1:74-96
TCTCTCTCTCTCTCGACTTTCAAATGGGAA74ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
010629AAZA006787HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA006787, mRNA sequence.
CN896748.1:101-123
TACTTTCTCTCTCACACTCTCAAATGGGAA101ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAAAGCTCCAAATCAGCG
010829ABCA001846HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA001846, mRNA sequence.
CN901824.1:63-85
TCTCTCTCTCTCTCGACTTTCAAATGGGAA63ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021014ABCA004674HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA004674, mRNA sequence.
CN902325.1:58-80
TCTCTCTCTCTCTCGACTTTCAAATGGGAA58ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021014ABCA005149HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA005149, mRNA sequence.
CN902514.1:72-94
TCTCTCTCTCTCTCGACTTTCAAATGGGAA72ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021014ABCA006046HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA006046, mRNA sequence.
CN902615.1:78-100
TCTCTCTCTCTCTCGACTTTCAAATGGGAA78ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021015ABCA002800HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA002800, mRNA sequence.
CN902772.1:74-96
TCTCTCTCTCTCTCGACTTTCAAATGGGAA74ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021015ABCA003173HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA003173, mRNA sequence.
CN902935.1:78-100
TCTCTCTCTCTCTCGACTTTCAAATGGGAA78ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021016ABCA003433HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA003433, mRNA sequence.
CN903065.1:64-86
TCTCTCTCTCTCTCGACTTTCAAATGGGAA64ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021016ABCA004387HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA004387, mRNA sequence.
CN903329.1:56-78
TCTCTCTCTCTCTCGACTTTCAAATGGGAA56ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021021ABCA005752HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA005752, mRNA sequence.
CN903774.1:62-84
TCTCTCTCTCTCTCGACTTTCAAATGGGAA62ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021021ABCA005843HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA005843, mRNA sequence.
CN903827.1:71-93
TCTCTCTCTCTCTCGACTTTCAAATGGGAA71ACTACATCTCATGCACTTTGGCCACGCCGATGATCAACAGCTCCAAGTCAGCG
021217ABMA003540HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA003540, mRNA sequence.
CN912314.1:64-86
TCTCTCTCTCTCTCGACTTTCAAATGGGAA64ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
021218ABMA004677HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA004677, mRNA sequence.
CN912984.1:67-89
TCTCTCTCTCTCTCGACTTTCAAATGGGAA67ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
030203ABPB004055HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB004055, mRNA sequence.
CN916207.1:89-111
ACTTTCTCTCTCTAGACTCTCAAATGGGAA89ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
030203ABPB003816HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003816, mRNA sequence.
CN916303.1:56-78
TCTCTCTCTCTCTCGACTTTCAAATGGGAA56ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
030203ABPB003598HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003598, mRNA sequence.
CN917956.1:83-105
ACTTTCTCTCTCTAGACTCTCAAATGGGAA83ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
030207ABPB006188HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB006188, mRNA sequence.
CN918789.1:67-89
TCTCTCTCTCTCTCGACTTTCAAATGGGAA67ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdrtp1004E16.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA, mRNA sequence.
DT040882.1:112-134
ACTTTCTCTCTCTAGACTCTCAAATGGGAA112ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
Mdrtp1005L14.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA, mRNA sequence.
DT042533.1:65-87
TCTCTCTCTCTCTCGACTTTCAAATGGGAA65ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdrtp1011K13.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA, mRNA sequence.
DT043290.1:29-51
CGAATTCCGTTGCTGTCGCAAATGGGAA29ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
F1-16-65 Apple fruit Lambda UniZap cDNA Library Malus domestica cDNA, mRNA sequence.
DW248820.1:56-78
TCTCTCTCTCTCTAGACTTTCAAATGGGAA56ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdfws2072A24.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to ref|NP_197237.1| expressed protein [Arabidopsis thaliana] pir|T51572 hypothetical protein T10B6_10 - Arabidopsis thaliana emb|CAC0173
GO510571.1:142-164
ACTTTCTCTCTCTAGACTCTCAAATGGGAA142ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
Mdfws2074K14.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to ref|NP_197237.1| expressed protein [Arabidopsis thaliana] pir|T51572 hypothetical protein T10B6_10 - Arabidopsis thaliana emb|CAC0173
GO511437.1:81-103
TCTCTCTCTCTCTCGACTTTCAAATGGGAA81ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdrtb1018J07.g1 Apple_EST_Mdrtb Malus domestica cDNA 5', mRNA sequence.
GO514779.1:87-109
TCTCTCTCTCTCTCGACTTTCAAATGGGAA87ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdfbg8014M06.g1 Apple_EST_Mdfbg Malus hybrid rootstock cDNA 5', mRNA sequence.
GO517579.1:37-59
CCGTTGCTGTCGTAGACTTTCAAATGGGAA37ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAGGTCAGCG
Mdfrg3156G03.g1 Apple_EST_Mdfrg Malus domestica cDNA 5', mRNA sequence.
GO523992.1:65-87
TCTCTCTCTCTCTCGACTTTCAAATGGGAA65ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdwdb7506H07.g1 Apple_EST_Mdwdb Malus domestica cDNA 5', mRNA sequence.
GO526072.1:74-96
TCTCTCTCTCTCTCGACTTTCAAATGGGAA74ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdwdr7510I03.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_197237.1| expressed protein [Arabidopsis thaliana] pir|T51572 hypothetical protein T10B6_10 - Arabidopsis thaliana emb|CAC0173
GO527638.1:70-92
TCTCTCTCTCTCTCGACTTTCAAATGGGAA70ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Mdltb7522O02.g1 Apple_EST_Mdltb Malus domestica cDNA 5', mRNA sequence.
GO532199.1:25-47
TCGAATTCCGTTGCTGTCGGGGAA25ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG
Pyrus pyrifolia mRNA, clone: NFR5_12_57, 5' end sequence, expressed in fruit.
HX756170.1:18-40
AGACTCTCAAATGGGAA18ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG
Pyrus pyrifolia mRNA, clone: NFR5_12_72, 5' end sequence, expressed in fruit.
HX756182.1:18-40
AGACTCTCAAATGGGAA18ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG
Pyrus pyrifolia mRNA, clone: NFR5_12_79, 5' end sequence, expressed in fruit.
HX756189.1:88-110
TCTCTCTCTCTCTAGACTCTCAAATGGGAA88ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG
TSA: Pyrus pyrifolia mRNA, contig: contig_3071.
FX396239.1:18-40
AGACTCTCAAATGGGAA18ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG
TSA: Pyrus x bretschneideri Unigene48333_XinShao mRNA sequence.
JR638450.1:53-75
ACTTTCTCTCTCTAGACTCTCAAATGGGAA53ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG
Prunus dulcis DNA, pseudomolecule Pd01.
AP019297.1:26448367-26448389
TTTTAATTCGTCACAAGTCTAGAATGGGAA26448367ACTACATCTCATGCACTTTGGCCACGCCTCTGATCAAGAGCTCCAAATCAGCA
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:38975364-38975386
ACTTTCTCTCTCTAGACTCTCAAATGGGAA38975364ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:28098489-28098511
TCTCTCTCTCTCTAGACTCTCAAATGGGAA28098489ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:1845112-1845134
CGCTGATTTGGAGCTCTTGATCATAGGCGT1845112GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:1924249-1924271
CGCTGACCTGGAGCTCTTGATCATCGGCGT1924249GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCTAGAGAGAGAGAGA
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:1901202-1901224
CGCTGATTTGGAGCTCTTGATCATAGGCGT1901202GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAGAGA
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:1910095-1910117
CGCTGATTTGGAGCTCTTGATCATAGGCGT1910095GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:2134652-2134674
CGCTGACTTGGAGCTCTTGATCATCGGCGT2134652GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 13.
OU696689.1:1954801-1954823
CGCTGATTTGGAGCTCTTGATCATAGGCGT1954801GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:2555790-2555812
CGCTGACTTGGAGCTCTTGATCATCGGCGT2555790GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:1922540-1922562
CGCTGATTTGGAGCTCTTGATCATAGGCGT1922540GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:2046457-2046479
CGCTGATTTGGAGCTCTTGATCATAGGCGT2046457GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGAGAAAGTAAGAGAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTACATCTCATGCACTTTGGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTACATCTCATGCACTTTGGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.042 | 2.033 | search_plus_done; http://172.18.8.135:50400/match?q=ACTACATCTCATGCACTTTGGCC&k=0&no_gap=0&offset=0&limit=50
2.107 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=GGCCAAAGTGCATGAGATGTAGT&k=0&no_gap=0&offset=0&limit=3
2.113 | 0.006 | cgi_end;

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