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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 02:54:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

57ACPE6_UP_029_A05_20SEP2004_047 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE416863.1:674-695
AGGAGAGACGATATGAGAAGGAGAGGTCAT674ACTCTCGTTCACCACCACGTAAAGGCTCAA
26RDBNT_UP_109_E04_08MAR2006_024 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES928974.1:474-495
AGGAGAGACGATATGAGAAGGAGAGGTCAT474ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCATGA
BNSCS3CT_UP_273_E10_19MAY2007_072 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV058571.1:488-509
AGGAGAGACGATACGAGAAGGAGAGGTCTT488ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGGAGTCATGA
BNSCS4CT_UP_162_B01_25MAY2007_013 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV070877.1:281-302
AGGAGAGACGATACGAGAAGGAGAGGTCTT281ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGGAGTCATGA
RS2AL09TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW724020.1:675-696
AGGAGAGACGATACGAGAAGGAGAGGTCAT675ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCGTG
BR032517 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-023F08 5', mRNA sequence.
EX047873.1:147-168
AGGAGAGACGATATGAGAAGGAGAGGTCAT147ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCATGA
BR082821 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-031E05 5', mRNA sequence.
EX096531.1:825-846
AGGAGAGACGATATGAGAAGGAGAGGTCAT825ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTC
BR102514 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-16G08 5', mRNA sequence.
EX118684.1:133-154
AGGAGAGACGATATGAGAAGGAGAGGTCAT133ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCATGA
RR3ES32TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD549173.1:672-693
AGGAGAGACGATACGAGAAGGAGGGGTCAT672ACTCTCGTTCACCACCACGTAATGGCTCAGGGCTCGCAGTGGAGTCGTGAGA
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF43K20, 5'-end sequence.
FY422675.1:674-695
AGGAGAGACGATATGAGAAGGAGAGGTCAT674ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCATGA
Raphanus sativus mRNA, clone: RSCF05M09, 5' end sequence.
FY429270.1:617-638
AGGAGAGACGATACGAGAAGGAGAGGTCAT617ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCGTGA
Raphanus sativus mRNA, clone: RSCF07E16, 5' end sequence.
FY429663.1:641-662
AGGAGAGACGATACGAGAAGGAGAGGTCAT641ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCGTGA
BNAOV1GH_T3_001_C04_12JULY2007_028 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR439681.1:613-634
AGGAGAGACGATACGAGAAGGAGAGGTCTT613ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGGAGTCATGA
c12_03na_2o.s 03na Brassica napus cDNA clone c12_03na_2o 5, mRNA sequence.
GT073604.1:333-354
AGGAGAGACGATACGAGAAGGAGAGGTCAT333ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCATGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1538.
FX668939.1:1137-1158
AGGAGAGACGATACGAGAAGGAGAGGTCAT1137ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCGTGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1191.
FX710598.1:993-1014
AGGAGAGACGATATGAGAAGGAGAGGTCAT993ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCATGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_885.
FX742873.1:690-711
AGGAGAGACGATATGAGAAGGAGAGGTCAT690ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCATGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6471.
FX758644.1:1312-1333
AGGAGAGACGATACGAGAAGGAGAGGTCAT1312ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCGTGA
TSA: Raphanus sativus RS14217 mRNA sequence.
JT798764.1:641-662
AGGAGAGACGATACGAGAAGGAGAGGTCAT641ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGAAGTCGTGA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:40979026-40979047
AGGAGAGACGATACGAGAAGGAGAGGTCTT40979026ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGGAGTCATGA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:27849240-27849261
AGGAGAGACGATACGAGAAGGAGAGGTCTT27849240ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGGAGTCATGA
Brassica rapa genome, scaffold: A01.
LR031571.1:32783803-32783824
AGGAGAGACGATACGAGAAGGAGAGGTCTT32783803ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGGAGTCATGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:33313952-33313973
AGGAGAGACGATACGAGAAGGAGAGGTCTT33313952ACTCTCGTTCACCACCACGTAATGGCTCAAGGGCTCGCAGTGGGAGTCATGA
65JKBNM0_T3_005_B03_16MAR2005_029 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587057.1:371-392
TCATGACTTCCACTGCGAGCCCTTGAGCCA371TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCATATCGTCTCTCCT
0187687 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV091333.1:492-513
TCATGACTTCCACTGCGAGCCCTTGAGCCA492TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCATATCGTCTCTCCT
RS2AL09JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW728503.1:411-432
TCACGACTTCCACTGCGAGCCCTTGAGCCA411TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCGTATCGTCTCTCCT
BR031609 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-011F12 5', mRNA sequence.
EX046965.1:265-286
TCATGACTTCCACTGCGAGCCCTTGAGCCA265TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCATATCGTCTCTCCT
RS1BU45JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX891639.1:203-224
TCACGACTTCCACTGCGAGCCCTTGAGCCA203TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTAGTATCGTCTCTCCT
RR3ES32JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD545261.1:421-442
TCACGACTTCCACTGCGAGCCCTTGAGCCA421TTACGTGGTGGTGAACGAGAGTATGACCCCTCCTTCTCGTATCGTCTCTCCT
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF43K20, 3'-end sequence.
FY427593.1:365-386
TCATGACTTCCACTGCGAGCCCTTGAGCCA365TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCATATCGTCTCTCCT
Raphanus sativus mRNA, clone: RSCL18K05, 5' end sequence.
FY439094.1:397-418
TCACGACTTCCACTGCGAGCCCTTGAGCCA397TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCGTATCGTCTCTCCT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:3334959-3334980
TCACGACTTCCACTGCGAGCCCTTGAGCCA3334959TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCGTATCGTCTCTCCT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:3334959-3334980
TCACGACTTCCACTGCGAGCCCTTGAGCCA3334959TTACGTGGTGGTGAACGAGAGTATGACCTCTCCTTCTCGTATCGTCTCTCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTCTCGTTCACCACCACGTAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTCTCGTTCACCACCACGTAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.042 | 1.034 | search_plus_done; http://172.18.8.135:50400/match?q=ACTCTCGTTCACCACCACGTAA&k=0&no_gap=0&offset=0&limit=50
1.544 | 0.502 | search_minus_done; http://172.18.8.135:50400/match?q=TTACGTGGTGGTGAACGAGAGT&k=0&no_gap=0&offset=0&limit=27
1.551 | 0.007 | cgi_end;

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