GGGenome | Results

2025-04-14 08:53:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Canis lupus familiaris breed Labrador retriever chromosome 02b.
CP050613.1:65694563-65694582

TTGATGACCTCTGAACCACAGTTCAGTTAA65694563ACTGATGCAGGAAAGAGGAAGAGCTCATTTGTCTTTACTATTTCAGCTGT

pOP-EON00555_EST_C_1_pSK_SK EON (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EON00555 similar to catalase, mRNA sequence.
DW248258.1:413-432

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG413ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

pOP-EON00569_EST_C_1_pSK_SK EON (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EON00569 similar to catalase, mRNA sequence.
DW248272.1:413-432

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG413ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

OPYF00016 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 128-B05-T3.seq, mRNA sequence.
EL680979.1:698-717

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG698ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

OPR02512 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_292.seq, mRNA sequence.
EL692472.1:142-161

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG142ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

pOP-CNIP00421 CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00421, mRNA sequence.
ES324079.1:89-108

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG89ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

pOP-CNH04952_EST_C_1_pSK_SK CNH (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNH04952 5', mRNA sequence.
EY400471.1:186-205

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG186ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

pOP-CNIP00421_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00421 5', mRNA sequence.
EY403542.1:89-108

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG89ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

pOP-CNIP00477_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00477 5', mRNA sequence.
EY404017.1:41-60

TCAAAGTTGGGAAGCAGTTTGCTCCAACTG41ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

DP-KSU30_06D_44 EST-DP-sukary library Phoenix dactylifera cDNA clone DP-KSU30_06D_44, mRNA sequence.
JZ768058.1:411-430

CAAAGTTTTGGAAGCAATGGGCTCCAAGAG411ACTGATGCAGGAAAGAGGAACATCCTTATGTCTAAAGAGGAAGTCCTTGT

Elaeis guineensis clone EGEMS0144 microsatellite sequence.
KJ830494.1:89-108

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG89ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

Elaeis guineensis clone EGEMS0190 microsatellite sequence.
KJ830503.1:89-108

TCAAAGTTTGGAAGCAGTTTGCTCCAACTG89ACTGATGCAGGAAAGAGGAATATCCTTATGTCTAAAGTGGAAGTCCTTGT

Acomys percivali genome assembly, chromosome: 14.
OU015755.1:93448733-93448752

CCCTGCCTGCCTACACCCTTGCCTGAGTCC93448733TTCCTCTTTCCTGCATCAGTTCTCTGAAATGTACCAGGACAACAAGATGT

Elaeis guineensis EST, clone (6lib)_isotig25765.
LM617601.1:314-333

ACAAGGACTTCCACTTTAGACATAAGGATA314TTCCTCTTTCCTGCATCAGTCAGTTGGAGCAAACTGCTTCCAAACTTTGA

TSA: Elaeis guineensis isotig13759.Elguifruit mRNA sequence.
JO100986.1:43-62

ACAAGGACTTCCACTTTAGACATAAGGATA43TTCCTCTTTCCTGCATCAGTCAGTTGGAGCAAACTGCTTCCAAACTTTGA

Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:21693647-21693666

ACTCCACCACAAAATCACCCAACGAAGAGC21693647TTCCTCTTTCCTGCATCAGTGATTGATTCCGGGTCACCCACTAACACAAA

Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:21632387-21632406

ACTCCACCACAAAATCACCCAACGAAGAGC21632387TTCCTCTTTCCTGCATCAGTGATTGATTCCGGGTCACCCACTAACACAAA

Trypanosoma congolense IL3000 annotated genomic contig, chromosome 10.
HE575323.1:3315506-3315525

TGCCCCTTGCTCGATTTTGTTTTCTTTTTC3315506TTCCTCTTTCCTGCATCAGTTGGGACGCTGCTCTCCGTATCCCCCTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.890 | 0.881 | search_plus_done; http://172.18.8.135:50400/match?q=ACTGATGCAGGAAAGAGGAA&k=0&no_gap=0&offset=0&limit=50
1.032 | 0.142 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCTCTTTCCTGCATCAGT&k=0&no_gap=0&offset=0&limit=38
1.036 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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