GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:42:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Plecotus auritus genome assembly, chromosome: 2.
OY734023.1:13433349-13433368
GACCTTGGCCTTGGACCGTGGGAAACCTGG13433349ACTTCCACCACCTGTTCCAGAAATGGGGCCCAGTCCAGTCCCCCATCAAC
37RDBRH_UP_016_C01_01APR2004_011 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE523443.1:365-384
GTCTGAGAAAAATGTGCTGTGTCACAAGAA365ACTTCCACCACCTGTTCCAGTGCATCGACCAATCACTAGGAAGTTTGCTG
TSA: Bubalus bubalis CuffSp4_GeneID_27177 mRNA sequence.
KA603189.1:426-445
CCCTCTTCTTAAAGTTGGATGCGCTCTCAA426ACTTCCACCACCTGTTCCAGAAATTAAAGTGGTATCAAATCTGCCCGCTG
Cucumis melo isolate PI 511890 chromosome 11.
CP136111.1:30191919-30191938
GTTCCCACCAACGCCGGTGTATGAAAAGCC30191919ACTTCCACCACCTGTTCCAGTTTATGAAAAACCTGTTCCTCCACCTACAC
Cucumis melo isolate PI 511890 chromosome 11.
CP136111.1:30191985-30192004
TCCTCCACCTACACCAGTCTATGAAAAGCC30191985ACTTCCACCACCTGTTCCAGTTTATGAAAAACCTGTTCCTCCACCTACAC
Cucumis melo isolate PI 511890 chromosome 11.
CP136111.1:30192051-30192070
TCCTCCACCTACACCAGTCTATGAAAAGCC30192051ACTTCCACCACCTGTTCCAGTTTATGAAAAACCTGTTCCTCCACCTACAC
Cucumis melo genomic scaffold, anchoredscaffold00045.
LN681913.1:222511-222530
GTTCCCACCAACGCCGGTGTATGAAAAGCC222511ACTTCCACCACCTGTTCCAGTTTATGAAAAACCTGTTCCTCCACCTACAC
Cucumis melo genomic scaffold, anchoredscaffold00045.
LN681913.1:222577-222596
TCCTCCACCTACACCAGTCTATGAAAAGCC222577ACTTCCACCACCTGTTCCAGTTTATGAAAAACCTGTTCCTCCACCTACAC
Astragalus glycyphyllos genome assembly, chromosome: 4.
OY754310.1:28690861-28690880
AGAAGTCCCGGTGAGTCACAGCCCTAGCCG28690861ACTTCCACCACCTGTTCCAGTTCCACCAATCAACGCCATCCCGGCACAAC
Eptesicus nilssonii genome assembly, chromosome: 7.
OX621286.1:90557693-90557712
TTGGTGGGGGGACTGGACTGGGCCCCACTT90557693CTGGAACAGGTGGTGGAAGTCCAGGTCTCCCACGGTCCAAGGCCATGGCC
Rhinatrema bivittatum genome assembly, chromosome: 1.
LR584387.1:641618041-641618060
TGTTCTTATAGATATGCCTGGAATGCCCAC641618041CTGGAACAGGTGGTGGAAGTTAAAATGGTAACAGACTTCAAAAAGTTATG
CTETI54TU Termite Coptotermes formosanus metatranscriptomic library Coptotermes formosanus cDNA clone CTET 3', mRNA sequence.
JK377999.1:53-72
CTTGACTTCTTCGCTATTTTTTTCATCCTT53CTGGAACAGGTGGTGGAAGTGTAGAACGTCCTTTAAAACAGTTGAGATAA
Corylus americana cultivar Rush chromosome 1.
CP125814.1:39149599-39149618
GAATAGGTGGTGGAAGTGGTTTCTCGAAAA39149599CTGGAACAGGTGGTGGAAGTGGCTTCTTATAAATTGGAATGGACGGTGGA
Cucumis melo genomic chromosome, chr_11.
LN713265.1:4136979-4136998
GTGTAGGTGGAGGAACAGGTTTTTCATAAA4136979CTGGAACAGGTGGTGGAAGTGGCTTTTCATAGACTGGTGTAGGTGGAGGA
Cucumis melo genomic chromosome, chr_11.
LN713265.1:4137045-4137064
GTGTAGGTGGAGGAACAGGTTTTTCATAAA4137045CTGGAACAGGTGGTGGAAGTGGCTTTTCATACACCGGCGTTGGTGGGAAC
Corylus avellana genome assembly, chromosome: ca1.
LR899423.1:44535519-44535538
GAATAGGTGGTGGAAGTGGTTTCTCGAAAA44535519CTGGAACAGGTGGTGGAAGTGGCTTCTTATAAATTGGAATGGACGGTGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTTCCACCACCTGTTCCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTTCCACCACCTGTTCCAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTCCACCACCTGTTCCAG&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.147 | search_minus_done; http://172.18.8.135:50400/match?q=CTGGAACAGGTGGTGGAAGT&k=0&no_gap=0&offset=0&limit=41
0.337 | 0.005 | cgi_end;

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